fluorojip: Analysis of Chlorophyll a Fluorescence Transient Parameters
Computes chlorophyll a fluorescence transient
parameters from fluorescence summary data, including minimum and
maximum fluorescence, selected transient steps, and area. Provides
standard photosynthetic performance indices and fluxes per reaction
center and per cross section. Includes helpers to read exported
trace tables in supported 'csv' formats and validation workflows
based on bundled example files, as well as visualization tools and
an interactive 'shiny' interface. The implemented calculations are
based on Strasser et al. (2004) <doi:10.1007/978-1-4020-3218-9_12>
and Stirbet and Govindjee (2011)
<doi:10.1016/j.jphotobiol.2010.12.010>.
| Version: |
0.1.1 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
stats, utils, graphics, grDevices, readxl |
| Suggests: |
knitr, rmarkdown, scatterplot3d, shiny, testthat (≥ 3.0.0) |
| Published: |
2026-04-09 |
| DOI: |
10.32614/CRAN.package.fluorojip (may not be active yet) |
| Author: |
Joao Everthon da Silva Ribeiro [aut, cre],
Toshik Iarley da Silva [aut],
Ronald Maldonado Rodriguez [aut] |
| Maintainer: |
Joao Everthon da Silva Ribeiro <everthonribeiro10 at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| CRAN checks: |
fluorojip results |
Documentation:
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