WayFindR: Computing Graph Structures on WikiPathways

Converts pathways from 'WikiPathways' GPML format or 'KEGG' KGML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).

Version:	0.5.0
Depends:	R (≥ 3.5)
Imports:	graphics, utils, XML, igraph, KEGGREST, AnnotationDbi, org.Hs.eg.db, DescTools, Rgraphviz
Suggests:	knitr, rmarkdown, Polychrome
Published:	2025-11-05
DOI:	10.32614/CRAN.package.WayFindR
Author:	Kevin R. Coombes [aut, cre], Polina Bombina [aut]
Maintainer:	Kevin R. Coombes <krc at silicovore.com>
License:	Artistic-2.0
URL:	http://oompa.r-forge.r-project.org/
NeedsCompilation:	no
CRAN checks:	WayFindR results [issues need fixing before 2026-01-31]

Documentation:

Reference manual:	WayFindR.html , WayFindR.pdf
Vignettes:	WayFindR: Creating Graph Structures From WikiPathways Files (source, R code) WayFindR: Computing Graph Metrics on WikiPathways (source, R code) WayFindR: Displaying WikiPathways (source, R code)

Downloads:

Package source:	WayFindR_0.5.0.tar.gz
Windows binaries:	r-devel: WayFindR_0.5.0.zip, r-release: WayFindR_0.5.0.zip, r-oldrel: WayFindR_0.5.0.zip
macOS binaries:	r-release (arm64): WayFindR_0.5.0.tgz, r-oldrel (arm64): WayFindR_0.5.0.tgz, r-release (x86_64): WayFindR_0.5.0.tgz, r-oldrel (x86_64): WayFindR_0.5.0.tgz
Old sources:	WayFindR archive

Linking:

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