Last updated on 2025-12-05 17:50:35 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3-4 | 5.71 | 82.56 | 88.27 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.3-4 | 5.30 | 38.74 | 44.04 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.3-4 | 17.00 | 121.32 | 138.32 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 2.3-4 | 23.00 | 117.29 | 140.29 | NOTE | |
| r-devel-windows-x86_64 | 2.3-4 | 8.00 | 109.00 | 117.00 | NOTE | |
| r-patched-linux-x86_64 | 2.3-4 | 7.57 | 71.64 | 79.21 | NOTE | |
| r-release-linux-x86_64 | 2.3-4 | 5.67 | 74.36 | 80.03 | NOTE | |
| r-release-macos-arm64 | 2.3-4 | OK | ||||
| r-release-macos-x86_64 | 2.3-4 | 5.00 | 64.00 | 69.00 | OK | |
| r-release-windows-x86_64 | 2.3-4 | 9.00 | 102.00 | 111.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.3-4 | OK | ||||
| r-oldrel-macos-x86_64 | 2.3-4 | 5.00 | 77.00 | 82.00 | OK | |
| r-oldrel-windows-x86_64 | 2.3-4 | 13.00 | 124.00 | 137.00 | OK |
Version: 2.3-4
Check: differences from ‘prabclus-Ex.Rout’ to ‘prabclus-Ex.Rout.save’
Result: NOTE
2c2
< Package 'mclust' version 6.1.2
---
> Package 'mclust' version 6.1.1
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 2.3-4
Check: tests
Result: NOTE
Running ‘donttestexamples.R’ [2s/3s]
Running ‘prabclustests.R’ [12s/14s]
Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ...4c4
< Package 'mclust' version 6.1.2
---
> Package 'mclust' version 6.1.1
Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64
Version: 2.3-4
Check: tests
Result: ERROR
Running ‘donttestexamples.R’ [1s/1s]
Running ‘prabclustests.R’ [1s/1s]
Running the tests in ‘tests/prabclustests.R’ failed.
Complete output:
> library(prabclus)
Loading required package: MASS
Loading required package: mclust
Package 'mclust' version 6.1.2
Type 'citation("mclust")' for citing this R package in publications.
> options(digits=4)
>
> data(kykladspecreg)
> data(nb)
> set.seed(1234)
> x <- prabinit(prabmatrix=kykladspecreg, neighborhood=nb)
>
> p1 <- prabtest(x, times=3, pd=0.35, ignore.richness=TRUE)
Simulation run 1 statistics value= 0.5811
Simulation run 2 statistics value= 0.4761
Simulation run 3 statistics value= 0.5022
Data value: 0.408
> p2 <- prabtest(x, times=3, pd=0.35, teststat="lcomponent")
Simulation run 1 statistics value= 9
Simulation run 2 statistics value= 19
Simulation run 3 statistics value= 43
Data value: 8
> p3 <- prabtest(x, times=3, pd=0.35, teststat="isovertice")
Simulation run 1 statistics value= 9
Simulation run 2 statistics value= 9
Simulation run 3 statistics value= 23
Data value: 15
> p4 <- prabtest(x, times=3, pd=0.35, teststat="nn", sf.sim=TRUE)
Simulation run 1 statistics value= 0.3598
Simulation run 2 statistics value= 0.3635
Simulation run 3 statistics value= 0.3441
Data value: 0.3192
> p5 <- prabtest(x, times=3, pd=0.35, teststat="inclusions")
Simulation run 1 statistics value= 470
Simulation run 2 statistics value= 547
Simulation run 3 statistics value= 365
Data value: 602
> summary(p1)
* Parametric bootstrap test for presence-absence data *
Test statistics: distratio , Tuning constant= 0.25
Distance: kulczynski
Simulation runs: 3
Disjunction parameter for presence-absence pattern: 0.35
Rows (regions) richness has been ignored by the null model.
Statistics value for original data: 0.408
Mean for null data: 0.5198 , range: 0.4761 0.5811
p= 0.25
> summary(p2)
* Parametric bootstrap test for presence-absence data *
Test statistics: lcomponent , Tuning constant= 60
Distance: kulczynski
Simulation runs: 3
Disjunction parameter for presence-absence pattern: 0.35
Statistics value for original data: 8
Mean for null data: 23.67 , range: 9 43
p= 0.25
> summary(p3)
* Parametric bootstrap test for presence-absence data *
Test statistics: isovertice , Tuning constant= 80
Distance: kulczynski
Simulation runs: 3
Disjunction parameter for presence-absence pattern: 0.35
Statistics value for original data: 15
Mean for null data: 13.67 , range: 9 23
p= 1
> summary(p4)
* Parametric bootstrap test for presence-absence data *
Test statistics: nn , Tuning constant= 4
Distance: kulczynski
Simulation runs: 3
Disjunction parameter for presence-absence pattern: 0.35
Statistics value for original data: 0.3192
Mean for null data: 0.3558 , range: 0.3441 0.3635
p= 0.25
> summary(p5)
* Parametric bootstrap test for presence-absence data *
Test statistics: inclusions , Tuning constant= NA
Distance: kulczynski
Simulation runs: 3
Disjunction parameter for presence-absence pattern: 0.35
Statistics value for original data: 602
Mean for null data: 460.7 , range: 365 547
p= 0.25
>
> data(veronica)
> vnb <- coord2dist(coordmatrix=veronica.coord[1:50,], cut=20,
+ file.format="decimal2",neighbors=TRUE)
> vei <- prabinit(prabmatrix=veronica[1:50,],
+ neighborhood=vnb$nblist,nbbetweenregions=FALSE,
+ distance="jaccard")
> print(vei)
Presence-absence matrix object with
50 species and 583 regions,
including species/individuals neighborhoods and
between-species distance matrix of type jaccard .
>
> # library(spdep)
> data(siskiyou)
> x <- prabinit(prabmatrix=siskiyou, neighborhood=siskiyou.nb,
+ distance="logkulczynski")
> build.nblist(x)
Error in loadNamespace(x) : there is no package called 'spdep'
Calls: build.nblist ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.3-4
Check: tests
Result: NOTE
Running ‘donttestexamples.R’
Running ‘prabclustests.R’ [21s/27s]
Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ...4c4
< Package 'mclust' version 6.1.2
---
> Package 'mclust' version 6.1.1
108,110c108
< Simulation run 1OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
< OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
< statistics value= 0.2931
---
> Simulation run 1 statistics value= 0.2931
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.3-4
Check: tests
Result: NOTE
Running ‘donttestexamples.R’
Running ‘prabclustests.R’ [22s/49s]
Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ...4c4
< Package 'mclust' version 6.1.2
---
> Package 'mclust' version 6.1.1
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.3-4
Check: tests
Result: NOTE
Running 'donttestexamples.R' [2s]
Running 'prabclustests.R' [11s]
Comparing 'prabclustests.Rout' to 'prabclustests.Rout.save' ...4c4
< Package 'mclust' version 6.1.2
---
> Package 'mclust' version 6.1.1
Flavor: r-devel-windows-x86_64
Version: 2.3-4
Check: tests
Result: NOTE
Running ‘donttestexamples.R’ [2s/3s]
Running ‘prabclustests.R’ [12s/17s]
Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ...4c4
< Package 'mclust' version 6.1.2
---
> Package 'mclust' version 6.1.1
Flavor: r-patched-linux-x86_64
Version: 2.3-4
Check: tests
Result: NOTE
Running 'donttestexamples.R' [2s]
Running 'prabclustests.R' [12s]
Comparing 'prabclustests.Rout' to 'prabclustests.Rout.save' ...4c4
< Package 'mclust' version 6.1.2
---
> Package 'mclust' version 6.1.1
Flavor: r-release-windows-x86_64