Last updated on 2025-12-05 17:50:34 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.7 | 2.71 | 41.08 | 43.79 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.7 | 2.16 | 20.69 | 22.85 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.7 | 66.92 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.7 | 11.00 | 70.80 | 81.80 | OK | |
| r-devel-windows-x86_64 | 0.2.7 | 6.00 | 70.00 | 76.00 | OK | |
| r-patched-linux-x86_64 | 0.2.7 | 3.62 | 36.52 | 40.14 | OK | |
| r-release-linux-x86_64 | 0.2.7 | 2.76 | 38.15 | 40.91 | OK | |
| r-release-macos-arm64 | 0.2.7 | OK | ||||
| r-release-macos-x86_64 | 0.2.7 | 3.00 | 52.00 | 55.00 | OK | |
| r-release-windows-x86_64 | 0.2.7 | 4.00 | 71.00 | 75.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.7 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.7 | 2.00 | 43.00 | 45.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.7 | 6.00 | 77.00 | 83.00 | OK |
Version: 0.2.7
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'covr', 'rtdists', 'knitr', 'rmarkdown', 'V8'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.7
Check: examples
Result: ERROR
Running examples in ‘pmwg-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pmwgs
> ### Title: Create a PMwG sampler and return the created object
> ### Aliases: pmwgs
>
> ### ** Examples
>
> # Specify the log likelihood function
> lba_loglike <- function(x, data) {
+ x <- exp(x)
+ if (any(data$rt < x["t0"])) {
+ return(-1e10)
+ }
+ # This is faster than "paste".
+ bs <- x["A"] + x[c("b1", "b2", "b3")][data$condition]
+
+ out <- rtdists::dLBA(
+ rt = data$rt, # nolint
+ response = data$stim,
+ A = x["A"],
+ b = bs,
+ t0 = x["t0"],
+ mean_v = x[c("v1", "v2")],
+ sd_v = c(1, 1),
+ distribution = "norm",
+ silent = TRUE
+ )
+ bad <- (out < 1e-10) | (!is.finite(out))
+ out[bad] <- 1e-10
+ out <- sum(log(out))
+ out
+ }
>
> # Specify parameter names and priors
> pars <- c("b1", "b2", "b3", "A", "v1", "v2", "t0")
> priors <- list(
+ theta_mu_mean = rep(0, length(pars)),
+ theta_mu_var = diag(rep(1, length(pars)))
+ )
>
> # Create the Particle Metropolis within Gibbs sampler object
> sampler <- pmwgs(
+ data = forstmann,
+ pars = pars,
+ ll_func = lba_loglike,
+ prior = priors
+ )
>
> sampler = init(sampler, particles=10)
MESSAGE: Sampling Initial values for random effects
|
| | 0%
|
|==== | 5%
|
|======= | 11%
|
|=========== | 16%
|
|=============== | 21%
|
|================== | 26%
|
|====================== | 32%
|
|========================== | 37%
|
|============================= | 42%
|
|================================= | 47%
|
|===================================== | 53%
|
|========================================= | 58%
|
|============================================ | 63%
|
|================================================ | 68%
|
|==================================================== | 74%
|
|======================================================= | 79%
|
|=========================================================== | 84%
|
|=============================================================== | 89%
|
|================================================================== | 95%
|
|======================================================================| 100%
> sampler = run_stage(sampler, stage="burn", iter=10, particles=10)
MESSAGE: Epsilon has been set to 0.5 based on number of parameters
MESSAGE: mix has been set to c(0.5, 0.5, 0) based on the stage being run
Phase 1: Burn in
| | 0% | New( 0%)
|====== | 10% | New( 0%)
|============ | 20% | New( 0%)
|================== | 30% | New(100%)
|======================== | 40% | New(100%)
|============================== | 50% | New(100%)
|==================================== | 60% | New(100%)Error in loadNamespace(x) : there is no package called ‘rtdists’
Calls: run_stage ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.7
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.7
Check: HTML version of manual
Result: NOTE
Skipping checking math rendering: package 'V8' unavailable
Flavor: r-devel-linux-x86_64-debian-gcc