Last updated on 2025-12-06 21:49:48 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.69 | 765.78 | 803.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 22.94 | 489.35 | 512.29 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 198.00 | 1148.48 | 1346.48 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 176.00 | 1136.63 | 1312.63 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 557.00 | 594.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.79 | 696.73 | 749.52 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 33.92 | 705.86 | 739.78 | ERROR | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 37.00 | 531.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 525.00 | 562.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 9.00 | 115.00 | 124.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 65.00 | 558.00 | 623.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 49.00 | 639.00 | 688.00 | ERROR |
Version: 0.10.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'quanteda', 'rmarkdown', 'visNetwork', 'htmlwidgets'
VignetteBuilder packages required for checking but not installed:
'knitr', 'rmarkdown'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [13m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2025-12-03 20:30:52.178844: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:52.188225: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:52.241396: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:52.3382: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:52.63962: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:52.640393: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:52.673667: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:52.73436: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:52.852686: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:52.853773: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:52.93476: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:53.094272: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:53.09641: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:53.223601: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:53.232458: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:53.319694: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:53.494901: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:53.503531: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:53.847005: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:53.847743: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:53.937428: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:54.430068: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:54.57678: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:54.57794: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:54.807348: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:56.204557: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:56.226136: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:57.125875: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:57.126669: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:57.162276: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:57.230187: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:57.375948: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:57.376974: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:57.452791: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:57.696058: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:57.709529: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:58.093506: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:58.094303: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:58.113741: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:58.145293: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:58.236962: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:58.240657: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:58.34573: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:58.412291: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:58.416551: DONE
> test_pipeop_isomap.R: 2025-12-03 20:30:58.74213: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:30:58.742924: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:58.770496: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:58.850435: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:30:59.035268: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:30:59.038904: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:30:59.095923: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:30:59.262424: embedding
> test_pipeop_isomap.R: 2025-12-03 20:30:59.271001: DONE
> test_pipeop_isomap.R: 2025-12-03 20:31:00.081115: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:00.087914: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:00.112966: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:00.195289: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:00.43192: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:31:00.433025: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:00.511669: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:00.681612: embedding
> test_pipeop_isomap.R: 2025-12-03 20:31:00.688634: DONE
> test_pipeop_isomap.R: 2025-12-03 20:31:01.035443: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:01.036204: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:01.06221: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:01.148698: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:01.372226: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-03 20:31:01.373302: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:01.446755: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:01.601827: embedding
> test_pipeop_isomap.R: 2025-12-03 20:31:01.609045: DONE
> test_pipeop_isomap.R: 2025-12-03 20:31:01.889582: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:01.890339: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:01.978638: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:02.013733: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:02.193271: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:02.19405: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:02.224538: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:02.290909: Classical Scaling
> test_pipeop_isomap.R: 2025-12-03 20:31:02.374123: Isomap START
> test_pipeop_isomap.R: 2025-12-03 20:31:02.381299: constructing knn graph
> test_pipeop_isomap.R: 2025-12-03 20:31:02.410511: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-03 20:31:02.470767: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.9110593')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [427s/210s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2025-11-29 16:11:02.279489: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.28023: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.289827: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.309264: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.367778: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.368258: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.377531: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.397061: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.458491: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.459182: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.47361: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.517176: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:02.518342: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:02.541654: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.542128: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.555725: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.600298: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:02.601701: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:02.681252: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.68175: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.699243: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.803264: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.836262: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.836912: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.870789: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.07982: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.097722: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.239251: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.239693: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.24714: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.266608: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.2969: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.297562: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.31355: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.354947: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.356141: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.489363: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.489792: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.498733: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.517413: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.562348: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.564548: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.579281: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.621957: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.623067: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.71452: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.714961: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.724657: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.74558: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.787524: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.788173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.801627: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.848686: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.849905: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.922364: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.92283: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.930304: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.948301: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.995377: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.996032: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.010417: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.053577: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:04.054799: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:04.130713: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.131173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.152408: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.171641: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.218403: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.219074: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.235689: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.279585: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:04.280857: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:04.365453: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.365898: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.373423: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.392494: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.471998: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.472474: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.479881: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.498398: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.520849: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.521299: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.528664: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.547723: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean absolute difference: Inf')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [103s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-07 07:00:43.503704: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.503948: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.506913: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.513242: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:43.525114: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.525239: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.527525: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.53399: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:43.540532: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.540702: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.545251: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.560706: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:43.561077: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:43.566291: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.566431: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.571099: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.586353: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:43.586765: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:43.613473: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.613595: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.617734: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.654355: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:43.662767: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.662963: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.671823: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.752697: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:43.753771: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:43.786093: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.786239: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.78862: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.794947: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:43.807586: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.807807: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.812306: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.82745: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:43.827858: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:43.860044: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.860176: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.862221: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.868245: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:43.879338: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.879536: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.884382: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.899645: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:43.900046: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:43.917869: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.918003: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.920393: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.927048: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:43.937863: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.938057: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.94801: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.96318: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:43.963541: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:43.982014: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:43.982163: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:43.984473: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:43.990566: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:44.001125: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:44.001302: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:44.005545: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:44.020451: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:44.02084: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:44.037518: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:44.037671: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:44.040142: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:44.046259: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:44.057321: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-07 07:00:44.057505: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:44.061898: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:44.076667: embedding
> test_pipeop_isomap.R: 2025-12-07 07:00:44.08221: DONE
> test_pipeop_isomap.R: 2025-12-07 07:00:44.102389: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:44.102508: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:44.104368: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:44.109847: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:44.124149: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:44.124264: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:44.126248: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:44.131813: Classical Scaling
> test_pipeop_isomap.R: 2025-12-07 07:00:44.136364: Isomap START
> test_pipeop_isomap.R: 2025-12-07 07:00:44.136513: constructing knn graph
> test_pipeop_isomap.R: 2025-12-07 07:00:44.138728: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-07 07:00:44.144915: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_colapply.R:9:3', 'test_pipeop_collapsefactors.R:6:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.8141071')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [309s/278s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-06 11:52:48.682799: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:48.683438: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:48.695001: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:48.736305: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:48.805583: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:48.806002: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:48.814296: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:48.834183: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:48.866579: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:48.867435: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:48.886164: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:48.965082: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:48.96747: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:48.99261: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:48.993979: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:49.526328: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:49.594104: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:49.595601: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:49.693027: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:49.693383: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:49.729672: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:49.871592: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:49.90553: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:49.906027: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:49.961556: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:50.256594: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:50.274114: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:50.411166: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:50.411488: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:50.418468: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:50.465172: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:50.486895: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:50.487299: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:50.505345: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:50.573912: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:50.575771: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:50.730361: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:50.730642: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:50.737287: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:50.762667: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:50.809612: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:50.810156: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:50.824232: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:50.902952: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:50.976663: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:51.031393: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:51.032684: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:51.040616: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:51.07679: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:51.120085: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:51.120578: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:51.179601: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:51.234283: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:51.235344: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:51.306309: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:51.306685: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:51.314902: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:51.335008: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:51.400126: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:51.40202: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:51.426844: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:51.499995: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:51.501361: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:51.609985: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:51.610361: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:51.618485: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:51.64518: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:51.689986: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-06 11:52:51.690397: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:51.704829: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:51.793008: embedding
> test_pipeop_isomap.R: 2025-12-06 11:52:51.794483: DONE
> test_pipeop_isomap.R: 2025-12-06 11:52:51.890124: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:51.891588: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:51.899483: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:51.921117: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:52.016129: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:52.016409: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:52.036572: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:52.095958: Classical Scaling
> test_pipeop_isomap.R: 2025-12-06 11:52:52.131718: Isomap START
> test_pipeop_isomap.R: 2025-12-06 11:52:52.132014: constructing knn graph
> test_pipeop_isomap.R: 2025-12-06 11:52:52.139088: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-06 11:52:52.180021: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R:
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [276s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-05 09:10:17.269554: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:17.270535: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:17.285775: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:17.310338: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:17.379008: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:17.37962: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:17.390467: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:17.407973: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:17.451409: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:17.452468: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:17.471692: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:17.509631: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:17.511396: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:17.552369: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:17.553087: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:17.588155: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:17.635238: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:17.63674: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:17.768119: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:17.768798: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:17.789241: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:17.89746: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:17.945532: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:17.946664: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:18.006027: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:18.245565: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:18.251105: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:18.476012: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:18.476689: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:18.487999: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:18.509757: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:18.6432: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:18.64429: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:18.666182: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:18.714406: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:18.716113: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:18.915012: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:18.915526: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:18.923468: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:18.943846: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:19.005978: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:19.006642: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:19.029213: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:19.08091: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:19.082849: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:19.211741: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:19.212383: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:19.222509: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:19.244268: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:19.314327: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:19.315242: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:19.333067: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:19.372758: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:19.3745: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:19.48358: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:19.484277: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:19.496862: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:19.519529: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:19.591323: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:19.592315: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:19.626329: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:19.676073: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:19.67789: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:19.769006: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:19.769498: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:19.780428: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:19.802959: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:19.87081: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-05 09:10:19.871714: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:19.891065: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:19.941783: embedding
> test_pipeop_isomap.R: 2025-12-05 09:10:19.943964: DONE
> test_pipeop_isomap.R: 2025-12-05 09:10:20.667826: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:20.668456: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:20.679931: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:20.697664: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:20.822275: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:20.823095: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:20.835371: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:20.858724: Classical Scaling
> test_pipeop_isomap.R: 2025-12-05 09:10:20.898576: Isomap START
> test_pipeop_isomap.R: 2025-12-05 09:10:20.89935: constructing knn graph
> test_pipeop_isomap.R: 2025-12-05 09:10:20.911428: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-05 09:10:20.934781: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.7240711')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64