Last updated on 2026-06-04 13:50:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.3 | 66.81 | 199.69 | 266.50 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.3 | 52.14 | 139.25 | 191.39 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.3 | 102.00 | 336.49 | 438.49 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.4 | 153.00 | 334.31 | 487.31 | OK | |
| r-devel-windows-x86_64 | 2.0.3 | 98.00 | 234.00 | 332.00 | OK | |
| r-patched-linux-x86_64 | 2.0.3 | 70.05 | 191.44 | 261.49 | OK | |
| r-release-linux-x86_64 | 2.0.3 | 70.07 | 190.18 | 260.25 | OK | |
| r-release-macos-arm64 | 2.0.4 | 16.00 | 62.00 | 78.00 | OK | |
| r-release-macos-x86_64 | 2.0.4 | 45.00 | 209.00 | 254.00 | OK | |
| r-release-windows-x86_64 | 2.0.3 | 102.00 | 224.00 | 326.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.4 | 13.00 | 64.00 | 77.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.4 | 44.00 | 193.00 | 237.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.3 | 113.00 | 281.00 | 394.00 | OK |
Version: 2.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.3
• Read the guide: run vignette()
• Get help: Visit the website at https://korsunskylab.github.io/harmony2/ and
report issues on https://github.com/immunogenomics/harmony/issues
>
> test_check("harmony")
119exists, retrying for cluster 32 3.2314
120exists, retrying for cluster 42 3.22857
169exists, retrying for cluster 45 1.83073
504exists, retrying for cluster 15 3.27917
Saving _problems/test_two_variable-11.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_two_variable.R:5:1'): (code run outside of `test_that()`) ──────
<std::logic_error/C++Error/error/condition>
Error: inv(): use of LAPACK must be enabled
Backtrace:
▆
1. ├─harmony::RunHarmony(...) at test_two_variable.R:5:1
2. └─harmony:::RunHarmony.default(...)
3. ├─base::tryCatch(...)
4. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─harmony:::harmonize(harmonyObj, max.iter.harmony, verbose)
6. └─harmonyObj$moe_correct_ridge_cpp()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 13 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang