Last updated on 2025-12-09 13:50:18 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2 | 1.25 | 49.21 | 50.46 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 1.58 | 27.65 | 29.23 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 12.00 | 70.39 | 82.39 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 92.21 | ERROR | |||
| r-devel-windows-x86_64 | 1.2 | 4.00 | 122.00 | 126.00 | OK | |
| r-patched-linux-x86_64 | 1.2 | 1.69 | 45.54 | 47.23 | OK | |
| r-release-linux-x86_64 | 1.2 | 1.98 | 45.53 | 47.51 | OK | |
| r-release-macos-arm64 | 1.3 | OK | ||||
| r-release-macos-x86_64 | 1.2 | 2.00 | 74.00 | 76.00 | OK | |
| r-release-windows-x86_64 | 1.2 | 4.00 | 127.00 | 131.00 | OK | |
| r-oldrel-macos-arm64 | 1.3 | 1.00 | 62.00 | 63.00 | OK | |
| r-oldrel-macos-x86_64 | 1.2 | 2.00 | 100.00 | 102.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2 | 5.00 | 161.00 | 166.00 | OK |
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE47018", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/
Error in open.connection(x, "rb") : cannot open the connection
Calls: getGeneExpressionFromGEO -> <Anonymous> -> read_html.default
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘qpdf’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘geneExpressionFromGEO-Ex.R’ failed
The error most likely occurred in:
> ### Name: getGeneExpressionFromGEO
> ### Title: Function that reads in the GEO code of a dataset, and returns
> ### the gene expression dataframe.
> ### Aliases: getGeneExpressionFromGEO
>
> ### ** Examples
>
> geneExpressionDF1 <- getGeneExpressionFromGEO("GSE47018", FALSE, FALSE)
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/
Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE47nnn/GSE47018
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Found 1 file(s)
GSE47018_series_matrix.txt.gz
HTTP 404 Not Found.File stored at:
/tmp/Rtmp5sUqHZ/working_dir/Rtmpgit7rn/GSE47018_series_matrix.txt.gz
Error in downloadFile(url, destfile = destfile, mode = "wb") :
Failed to download /tmp/Rtmp5sUqHZ/working_dir/Rtmpgit7rn/GSE47018_series_matrix.txt.gz!
Calls: getGeneExpressionFromGEO ... <Anonymous> -> getAndParseGSEMatrices -> downloadFile
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc