Last updated on 2025-12-07 05:49:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.1 | 13.32 | 347.06 | 360.38 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.3.1 | 9.72 | 122.77 | 132.49 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.3.1 | 34.00 | 543.40 | 577.40 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.3.1 | 69.00 | 525.96 | 594.96 | OK | |
| r-devel-windows-x86_64 | 2.3.1 | 19.00 | 371.00 | 390.00 | OK | |
| r-patched-linux-x86_64 | 2.3.1 | 15.03 | 329.04 | 344.07 | OK | |
| r-release-linux-x86_64 | 2.3.1 | 13.62 | 328.64 | 342.26 | OK | |
| r-release-macos-arm64 | 2.3.1 | 9.00 | 94.00 | 103.00 | OK | |
| r-release-macos-x86_64 | 2.3.1 | 18.00 | 493.00 | 511.00 | OK | |
| r-release-windows-x86_64 | 2.3.1 | 18.00 | 355.00 | 373.00 | OK | |
| r-oldrel-macos-arm64 | 2.3.1 | 5.00 | 92.00 | 97.00 | OK | |
| r-oldrel-macos-x86_64 | 2.3.1 | 25.00 | 585.00 | 610.00 | OK | |
| r-oldrel-windows-x86_64 | 2.3.1 | 23.00 | 416.00 | 439.00 | OK |
Version: 2.3.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'ggtree', 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [41s/51s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(deeptime)
>
> test_check("deeptime")
viewport[GRID.VP.403]
viewport[GRID.VP.554]
Saving _problems/test-guides-194.R
Saving _problems/test-guides-210.R
NULL
NULL
NULL
[ FAIL 2 | WARN 0 | SKIP 37 | PASS 131 ]
══ Skipped tests (37) ══════════════════════════════════════════════════════════
• On CRAN (27): 'test-coord_geo.R:55:1', 'test-coord_geo.R:80:3',
'test-coord_geo.R:102:1', 'test-coord_geo.R:117:1', 'test-coord_geo.R:132:1',
'test-coord_geo.R:153:1', 'test-coord_trans_flip.R:1:1',
'test-coord_trans_xy.R:1:1', 'test-disparity_through_time.R:1:1',
'test-facet_color.R:1:1', 'test-facet_color.R:78:1',
'test-facet_color.R:121:1', 'test-facet_color.R:167:1',
'test-get_scale_data.R:14:3', 'test-guides.R:1:1', 'test-guides.R:73:1',
'test-guides.R:88:1', 'test-guides.R:103:1', 'test-guides.R:125:1',
'test-patterns.R:42:1', 'test-patterns.R:55:1', 'test-patterns.R:76:1',
'test-phylomorpho.R:1:1', 'test-points_range.R:1:1', 'test-scales.R:1:1',
'test-scales.R:14:1', 'test-scales.R:27:1'
• R.Version()$os != "mingw32" is TRUE (2): 'test-patterns.R:9:3',
'test-patterns.R:99:3'
• {ggtree} is not installed (8): 'test-coord_geo.R:171:3',
'test-coord_geo.R:183:3', 'test-coord_geo_polar.R:1:1',
'test-coord_geo_radial.R:1:1', 'test-geom_text_phylo.R:3:3',
'test-ggarrange2.R:25:3', 'test-guides.R:149:3', 'test-guides.R:163:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-guides.R:184:3'): guide_geo works with coord_geo_radial ────────
Error in `revts(ggtree(tree))`: could not find function "revts"
── Error ('test-guides.R:200:3'): ggtree scale works with only fossil taxa ─────
Error in `ggtree(ceratopsianTreeRaia, position = position_nudge(x = -ceratopsianTreeRaia$root.time))`: could not find function "ggtree"
[ FAIL 2 | WARN 0 | SKIP 37 | PASS 131 ]
Deleting unused snapshots: 'coord_geo/scale-on-fossil-ggtree-new.svg',
'coord_geo/scale-on-ggtree-new.svg',
'coord_geo/scales-on-different-sides1-new.svg',
'coord_geo/scales-on-different-sides2-new.svg',
'coord_geo_polar/coord-geo-polar-grey-new.svg',
'coord_geo_polar/coord-geo-polar-new.svg',
'coord_geo_polar/coord-geo-polar-pos-new.svg',
'coord_geo_polar/scale-on-fossil-ggtree-new.svg',
'coord_geo_polar/scale-on-fossil-ggtree-with-labels-new.svg',
'coord_geo_polar/stacked-scales-new.svg',
'coord_geo_radial/coord-geo-radial-new.svg',
'coord_geo_radial/scale-on-fossil-ggtree-new.svg',
'coord_geo_radial/scale-on-fossil-ggtree-with-labels-new.svg',
'coord_geo_radial/stacked-scales-new.svg',
'geom_text_phylo/geom-text-phylo-new.svg',
'ggarrange2/double-ggarrange2-layout-new.svg',
'ggarrange2/double-ggarrange2-new.svg',
'ggarrange2/ggarrange2-no-dims-layout-new.svg', …,
'patterns/scale-fill-geopattern-na2-new.svg', and
'patterns/scale-fill-geopattern-new.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.3.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc