Package: NGSToolKit
Type: Package
Title: RNA-Seq Analysis and Genome Visualization 'Shiny' Platform
Version: 0.1.4
Authors@R: c(
    person("Sona", "Charles", email = "sonacharlesicar@gmail.com", role = c("aut", "cre")),
    person("Febin T", "Nabeel", email = "nabeelfebin@gmail.com", role = "aut"),
    person("T E", "Sheeja", email = "sheeja.te@icar.org.in", role = "aut")
  )
Author: Sona Charles [aut, cre],
  Febin T Nabeel [aut],
  T E Sheeja [aut]
Maintainer: Sona Charles <sonacharlesicar@gmail.com>
Description: Interactive 'Shiny' web application for comprehensive RNA-Seq data
    analysis, quality control, differential expression analysis with 'DESeq2',
    dimensionality reduction (PCA, t-SNE, UMAP), clustering, and integrated
    'JBrowse 2' genome visualization. For differential expression analysis
    methods, see Love (2014) <doi:10.1186/s13059-014-0550-8>.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.0.0)
Imports: shiny (>= 1.7.0), shinydashboard (>= 0.7.0), shinyjs (>=
        2.1.0), shinycssloaders (>= 1.0.0), DT (>= 0.20), ggplot2 (>=
        3.3.0), DESeq2, SummarizedExperiment, uwot, Rtsne, pheatmap,
        reshape2, Rsamtools, tools, jsonlite, utils, stats, graphics,
        grDevices
Suggests: testthat (>= 3.0.0)
URL: https://github.com/bigfacilityiisr/NGS-Tool-Kit
BugReports: https://github.com/bigfacilityiisr/NGS-Tool-Kit/issues
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
RoxygenNote: 7.3.3
Packaged: 2026-09-03 02:43:47 UTC; Febin T Nabeel
Repository: CRAN
Date/Publication: 2026-09-12 13:40:22 UTC
