Package: cellpypes
Title: Cell Type Pipes for Single-Cell RNA Sequencing Data
Version: 0.3.0
Authors@R: 
    person(given = "Felix",
           family = "Frauhammer",
           role = c("aut", "cre"),
           email = "felixfrauhammer@gmail.com")
Description: Annotate single-cell RNA sequencing data manually based on
    marker gene thresholds.
    Find cell type rules (gene+threshold) through exploration,
    use the popular piping operator '%>%' to reconstruct complex
    cell type hierarchies.
    'cellpypes' models technical noise to find positive and negative cells for
    a given expression threshold and returns cell type labels or pseudobulks.
    Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
    visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
    features.
URL: https://github.com/FelixTheStudent/cellpypes
BugReports: https://github.com/FelixTheStudent/cellpypes/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.0
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, Seurat, DESeq2,
        RcppAnnoy, tibble, SeuratObject
Config/testthat/edition: 3
Imports: scUtils, ggplot2, Matrix, rlang, viridis, cowplot, dplyr,
        scales, methods, scattermore
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2024-01-27 02:26:57 UTC; felix
Author: Felix Frauhammer [aut, cre]
Maintainer: Felix Frauhammer <felixfrauhammer@gmail.com>
Repository: CRAN
Date/Publication: 2024-01-27 07:30:07 UTC
Built: R 4.6.0; ; 2025-10-11 03:16:11 UTC; windows
