Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 8454)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 40261)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-5659	-1.303e+04	0.0000	4253.0	50.31%	479.1	1.19%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-4292	-9.884e+03	0.0000	4423.0	52.32%	1178.3	2.93%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-98	-2.277e+02	0.0000	117.0	1.38%	32.4	0.08%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-92	-2.119e+02	0.0000	1220.0	14.43%	3146.6	7.83%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-89	-2.059e+02	0.0000	1204.0	14.24%	3120.9	7.77%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-60	-1.387e+02	0.0000	1188.0	14.05%	3463.4	8.62%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-59	-1.363e+02	0.0000	980.0	11.59%	2703.6	6.73%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-55	-1.288e+02	0.0000	4520.0	53.47%	18025.9	44.88%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-54	-1.261e+02	0.0000	2778.0	32.86%	10140.1	25.25%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-52	-1.201e+02	0.0000	2155.0	25.49%	7528.9	18.75%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-50	-1.170e+02	0.0000	1072.0	12.68%	3175.3	7.91%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-44	-1.035e+02	0.0000	2738.0	32.39%	10244.4	25.51%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-29	-6.889e+01	0.0000	1779.0	21.05%	6538.6	16.28%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-25	-5.823e+01	0.0000	1289.0	15.25%	4600.1	11.45%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-21	-4.925e+01	0.0000	3077.0	36.40%	12645.8	31.49%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-17	-4.008e+01	0.0000	694.0	8.21%	2362.5	5.88%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-16	-3.768e+01	0.0000	2306.0	27.28%	9388.1	23.38%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-14	-3.368e+01	0.0000	1161.0	13.73%	4409.0	10.98%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-14	-3.335e+01	0.0000	1421.0	16.81%	5542.1	13.80%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-14	-3.304e+01	0.0000	1234.0	14.60%	4734.6	11.79%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-14	-3.231e+01	0.0000	3107.0	36.76%	13174.8	32.80%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-13	-3.197e+01	0.0000	1424.0	16.85%	5581.1	13.90%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-13	-3.043e+01	0.0000	41.0	0.49%	47.0	0.12%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-12	-2.765e+01	0.0000	1356.0	16.04%	5367.6	13.36%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-11	-2.759e+01	0.0000	1126.0	13.32%	4363.8	10.87%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-11	-2.698e+01	0.0000	1487.0	17.59%	5959.8	14.84%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-11	-2.661e+01	0.0000	1657.0	19.60%	6723.5	16.74%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-11	-2.642e+01	0.0000	2430.0	28.75%	10220.8	25.45%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-10	-2.407e+01	0.0000	1042.0	12.33%	4064.1	10.12%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-10	-2.372e+01	0.0000	2241.0	26.51%	9431.6	23.48%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-10	-2.356e+01	0.0000	1582.0	18.72%	6459.4	16.08%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-9	-2.298e+01	0.0000	630.0	7.45%	2317.8	5.77%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-9	-2.202e+01	0.0000	1878.0	22.22%	7829.9	19.50%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-9	-2.127e+01	0.0000	1323.0	15.65%	5359.8	13.35%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-9	-2.082e+01	0.0000	251.0	2.97%	798.4	1.99%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-8	-1.883e+01	0.0000	1321.0	15.63%	5409.6	13.47%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-7	-1.842e+01	0.0000	2110.0	24.96%	8988.6	22.38%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-7	-1.835e+01	0.0000	1209.0	14.30%	4922.6	12.26%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-7	-1.821e+01	0.0000	1578.0	18.67%	6578.2	16.38%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-7	-1.704e+01	0.0000	3150.0	37.26%	13843.4	34.47%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-7	-1.700e+01	0.0000	548.0	6.48%	2065.3	5.14%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-7	-1.617e+01	0.0000	451.0	5.34%	1668.1	4.15%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-6	-1.600e+01	0.0000	1280.0	15.14%	5299.2	13.19%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-6	-1.593e+01	0.0000	917.0	10.85%	3687.4	9.18%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-6	-1.582e+01	0.0000	757.0	8.96%	2988.4	7.44%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-6	-1.560e+01	0.0000	954.0	11.29%	3858.5	9.61%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-6	-1.520e+01	0.0000	648.0	7.67%	2527.8	6.29%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-6	-1.484e+01	0.0000	694.0	8.21%	2734.2	6.81%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-6	-1.455e+01	0.0000	762.0	9.01%	3037.6	7.56%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-6	-1.413e+01	0.0000	408.0	4.83%	1519.5	3.78%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-6	-1.388e+01	0.0000	707.0	8.36%	2811.1	7.00%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-5	-1.352e+01	0.0000	842.0	9.96%	3413.9	8.50%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-5	-1.324e+01	0.0000	1452.0	17.18%	6156.8	15.33%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-5	-1.306e+01	0.0000	1320.0	15.62%	5564.2	13.85%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-5	-1.270e+01	0.0000	629.0	7.44%	2496.8	6.22%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-5	-1.266e+01	0.0000	382.0	4.52%	1433.3	3.57%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-5	-1.252e+01	0.0000	428.0	5.06%	1631.2	4.06%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-5	-1.235e+01	0.0000	659.0	7.80%	2635.7	6.56%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-5	-1.226e+01	0.0000	349.0	4.13%	1300.2	3.24%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-5	-1.224e+01	0.0000	858.0	10.15%	3516.6	8.76%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-5	-1.221e+01	0.0000	1565.0	18.51%	6704.3	16.69%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-5	-1.185e+01	0.0000	862.0	10.20%	3544.9	8.83%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-5	-1.184e+01	0.0000	141.0	1.67%	454.8	1.13%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4	-1.127e+01	0.0001	317.0	3.75%	1181.7	2.94%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-4	-1.111e+01	0.0001	1188.0	14.05%	5029.8	12.52%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-4	-1.093e+01	0.0001	725.0	8.58%	2960.3	7.37%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-4	-1.085e+01	0.0001	466.0	5.51%	1826.4	4.55%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-4	-1.070e+01	0.0001	112.0	1.32%	352.2	0.88%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-4	-1.065e+01	0.0001	317.0	3.75%	1191.6	2.97%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-4	-1.055e+01	0.0002	282.0	3.34%	1045.1	2.60%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-1.044e+01	0.0002	587.0	6.94%	2363.8	5.89%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-4	-1.043e+01	0.0002	741.0	8.77%	3044.1	7.58%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-4	-1.041e+01	0.0002	156.0	1.85%	528.7	1.32%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-4	-1.022e+01	0.0002	408.0	4.83%	1588.2	3.95%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-4	-9.950e+00	0.0003	521.0	6.16%	2085.9	5.19%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-4	-9.873e+00	0.0003	205.0	2.43%	735.0	1.83%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-4	-9.788e+00	0.0003	318.0	3.76%	1210.3	3.01%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-4	-9.601e+00	0.0004	473.0	5.60%	1883.1	4.69%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-4	-9.323e+00	0.0005	1714.0	20.28%	7497.0	18.67%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-4	-9.251e+00	0.0005	3372.0	39.89%	15226.8	37.91%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-3	-8.696e+00	0.0009	1578.0	18.67%	6898.3	17.18%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-3	-8.538e+00	0.0010	287.0	3.40%	1100.7	2.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-8.447e+00	0.0011	383.0	4.53%	1517.0	3.78%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-8.442e+00	0.0011	694.0	8.21%	2890.2	7.20%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-8.435e+00	0.0011	245.0	2.90%	923.2	2.30%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-8.018e+00	0.0016	938.0	11.10%	4002.3	9.97%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-7.960e+00	0.0017	288.0	3.41%	1115.7	2.78%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-3	-7.915e+00	0.0018	950.0	11.24%	4060.2	10.11%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-3	-7.900e+00	0.0018	2434.0	28.79%	10903.3	27.15%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-7.876e+00	0.0018	149.0	1.76%	530.5	1.32%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-7.798e+00	0.0019	363.0	4.29%	1443.7	3.59%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-7.763e+00	0.0020	101.0	1.19%	337.9	0.84%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.668e+00	0.0022	419.0	4.96%	1692.0	4.21%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-7.649e+00	0.0022	365.0	4.32%	1456.0	3.63%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-7.622e+00	0.0022	161.0	1.90%	583.7	1.45%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-7.433e+00	0.0026	360.0	4.26%	1438.5	3.58%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.343e+00	0.0029	593.0	7.02%	2471.9	6.15%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-3	-7.278e+00	0.0030	364.0	4.31%	1459.1	3.63%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-3	-7.240e+00	0.0031	1673.0	19.79%	7402.2	18.43%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-7.151e+00	0.0034	168.0	1.99%	619.9	1.54%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-3	-7.149e+00	0.0034	183.0	2.16%	682.9	1.70%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-3	-7.101e+00	0.0035	766.0	9.06%	3256.8	8.11%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-3	-7.038e+00	0.0036	352.0	4.16%	1412.9	3.52%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-6.732e+00	0.0049	659.0	7.80%	2786.4	6.94%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-2	-6.701e+00	0.0050	449.0	5.31%	1848.9	4.60%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-6.581e+00	0.0056	265.0	3.13%	1043.1	2.60%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-6.305e+00	0.0073	552.0	6.53%	2319.3	5.77%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-6.273e+00	0.0075	50.0	0.59%	152.1	0.38%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.267e+00	0.0075	3005.0	35.55%	13674.7	34.05%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-6.248e+00	0.0075	581.0	6.87%	2451.0	6.10%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-2	-6.246e+00	0.0075	393.0	4.65%	1612.3	4.01%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-6.142e+00	0.0082	1476.0	17.46%	6546.7	16.30%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-2	-6.137e+00	0.0082	225.0	2.66%	880.0	2.19%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-6.126e+00	0.0082	968.0	11.45%	4211.7	10.49%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-5.966e+00	0.0095	3001.0	35.50%	13675.4	34.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.859e+00	0.0105	42.0	0.50%	125.2	0.31%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-2	-5.763e+00	0.0115	413.0	4.89%	1714.9	4.27%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-5.736e+00	0.0117	664.0	7.86%	2843.4	7.08%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.614e+00	0.0131	1429.0	16.91%	6356.0	15.83%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-5.601e+00	0.0132	1008.0	11.92%	4417.7	11.00%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-5.506e+00	0.0144	932.0	11.03%	4073.2	10.14%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-5.471e+00	0.0148	696.0	8.23%	2998.6	7.47%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-5.410e+00	0.0156	125.0	1.48%	465.3	1.16%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.003e+00	0.0232	35.0	0.41%	105.8	0.26%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-4.858e+00	0.0266	53.0	0.63%	176.8	0.44%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-4.842e+00	0.0268	436.0	5.16%	1845.8	4.60%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.768e+00	0.0286	76.0	0.90%	270.3	0.67%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-4.650e+00	0.0320	2025.0	23.96%	9187.6	22.88%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-2	-4.646e+00	0.0320	667.0	7.89%	2899.2	7.22%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-2	-4.607e+00	0.0329	785.0	9.29%	3440.9	8.57%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-4.593e+00	0.0331	461.0	5.45%	1966.3	4.90%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-4.520e+00	0.0353	343.0	4.06%	1438.7	3.58%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-4.477e+00	0.0366	555.0	6.57%	2396.6	5.97%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-4.467e+00	0.0367	1392.0	16.47%	6249.2	15.56%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-4.396e+00	0.0391	643.0	7.61%	2800.3	6.97%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-4.342e+00	0.0409	465.0	5.50%	1993.3	4.96%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.308e+00	0.0421	541.0	6.40%	2339.9	5.83%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.297e+00	0.0422	1110.0	13.13%	4952.1	12.33%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-4.224e+00	0.0451	524.0	6.20%	2265.3	5.64%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-4.207e+00	0.0455	74.0	0.88%	269.8	0.67%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.205e+00	0.0455	1132.0	13.39%	5059.3	12.60%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-1	-4.153e+00	0.0474	1427.0	16.88%	6431.7	16.01%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.122e+00	0.0485	489.0	5.78%	2110.4	5.25%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.065e+00	0.0510	472.0	5.58%	2035.1	5.07%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-4.038e+00	0.0520	111.0	1.31%	428.1	1.07%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-4.028e+00	0.0522	1364.0	16.14%	6146.6	15.30%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.992e+00	0.0538	1033.0	12.22%	4613.7	11.49%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.940e+00	0.0562	31.0	0.37%	98.9	0.25%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-3.809e+00	0.0637	1045.0	12.36%	4679.4	11.65%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-3.776e+00	0.0654	386.0	4.57%	1656.4	4.12%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-1	-3.729e+00	0.0681	155.0	1.83%	625.2	1.56%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.688e+00	0.0705	235.0	2.78%	980.4	2.44%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.665e+00	0.0717	227.0	2.69%	945.3	2.35%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.625e+00	0.0741	368.0	4.35%	1581.0	3.94%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-1	-3.547e+00	0.0796	179.0	2.12%	735.2	1.83%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-3.398e+00	0.0917	41.0	0.49%	143.0	0.36%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.375e+00	0.0933	960.0	11.36%	4311.1	10.73%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-3.373e+00	0.0933	1211.0	14.33%	5477.4	13.64%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.349e+00	0.0945	172.0	2.03%	709.0	1.77%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.341e+00	0.0947	99.0	1.17%	389.8	0.97%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-3.200e+00	0.1084	1089.0	12.88%	4921.5	12.25%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.180e+00	0.1098	352.0	4.16%	1524.6	3.80%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.178e+00	0.1098	45.0	0.53%	162.5	0.40%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-3.129e+00	0.1143	133.0	1.57%	542.8	1.35%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.023e+00	0.1263	835.0	9.88%	3753.9	9.35%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.961e+00	0.1335	156.0	1.85%	649.0	1.62%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-1	-2.902e+00	0.1408	864.0	10.22%	3895.0	9.70%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.873e+00	0.1440	533.0	6.31%	2366.1	5.89%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.849e+00	0.1466	314.0	3.71%	1364.0	3.40%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-2.805e+00	0.1523	387.0	4.58%	1699.1	4.23%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.762e+00	0.1581	29.0	0.34%	101.8	0.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.686e+00	0.1695	1401.0	16.57%	6415.3	15.97%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-2.670e+00	0.1713	1914.0	22.64%	8823.4	21.97%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-2.501e+00	0.2017	1384.0	16.37%	6351.5	15.81%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.497e+00	0.2017	127.0	1.50%	531.9	1.32%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-2.410e+00	0.2183	7.0	0.08%	18.1	0.05%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.410e+00	0.2183	155.0	1.83%	659.1	1.64%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.396e+00	0.2189	166.0	1.96%	709.0	1.77%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.310e+00	0.2372	357.0	4.22%	1584.9	3.95%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.279e+00	0.2433	1063.0	12.58%	4867.1	12.12%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-2.279e+00	0.2433	430.0	5.09%	1922.3	4.79%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.246e+00	0.2488	879.0	10.40%	4010.5	9.99%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.239e+00	0.2492	478.0	5.65%	2146.3	5.34%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.239e+00	0.2492	106.0	1.25%	444.3	1.11%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.183e+00	0.2607	151.0	1.79%	648.2	1.61%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.172e+00	0.2622	66.0	0.78%	268.9	0.67%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-2.099e+00	0.2807	81.0	0.96%	336.6	0.84%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.077e+00	0.2851	529.0	6.26%	2392.2	5.96%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.048e+00	0.2922	165.0	1.95%	716.4	1.78%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.035e+00	0.2944	155.0	1.83%	671.4	1.67%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.032e+00	0.2944	205.0	2.43%	899.7	2.24%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.017e+00	0.2965	116.0	1.37%	495.5	1.23%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.009e+00	0.2975	243.0	2.87%	1074.1	2.67%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.975e+00	0.3062	17.0	0.20%	60.9	0.15%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.935e+00	0.3169	79.0	0.93%	331.1	0.82%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.916e+00	0.3213	153.0	1.81%	666.6	1.66%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.916e+00	0.3213	78.0	0.92%	327.5	0.82%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.874e+00	0.3320	248.0	2.93%	1103.6	2.75%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.855e+00	0.3364	783.0	9.26%	3592.0	8.94%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.847e+00	0.3375	1026.0	12.14%	4731.5	11.78%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.779e+00	0.3595	201.0	2.38%	891.5	2.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.729e+00	0.3759	2200.0	26.03%	10274.7	25.58%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.713e+00	0.3803	117.0	1.38%	510.0	1.27%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.710e+00	0.3803	407.0	4.81%	1848.9	4.60%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.700e+00	0.3814	187.0	2.21%	830.6	2.07%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.663e+00	0.3939	906.0	10.72%	4185.2	10.42%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.657e+00	0.3943	140.0	1.66%	616.9	1.54%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.614e+00	0.4096	220.0	2.60%	986.6	2.46%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.610e+00	0.4096	534.0	6.32%	2447.4	6.09%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.599e+00	0.4119	381.0	4.51%	1734.9	4.32%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.576e+00	0.4195	1781.0	21.07%	8315.1	20.70%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.559e+00	0.4248	1389.0	16.43%	6468.4	16.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.512e+00	0.4428	1042.0	12.33%	4839.5	12.05%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.512e+00	0.4428	324.0	3.83%	1474.9	3.67%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.503e+00	0.4429	155.0	1.83%	691.7	1.72%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.501e+00	0.4429	12.0	0.14%	44.1	0.11%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.469e+00	0.4541	792.0	9.37%	3669.0	9.14%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.406e+00	0.4813	627.0	7.42%	2899.6	7.22%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.405e+00	0.4813	199.0	2.35%	899.7	2.24%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.400e+00	0.4813	30.0	0.35%	124.2	0.31%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.332e+00	0.5113	292.0	3.45%	1336.5	3.33%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.304e+00	0.5233	496.0	5.87%	2293.5	5.71%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.299e+00	0.5234	26.0	0.31%	108.3	0.27%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.284e+00	0.5289	1267.0	14.99%	5926.2	14.76%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.262e+00	0.5384	177.0	2.09%	804.2	2.00%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-1.228e+00	0.5545	335.0	3.96%	1544.4	3.85%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.227e+00	0.5545	162.0	1.92%	736.1	1.83%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.221e+00	0.5545	78.0	0.92%	347.2	0.86%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.190e+00	0.5685	331.0	3.92%	1528.2	3.81%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.189e+00	0.5685	46.0	0.54%	202.0	0.50%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.150e+00	0.5865	292.0	3.45%	1348.1	3.36%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.124e+00	0.5993	522.0	6.18%	2431.7	6.05%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.034e+00	0.6529	240.0	2.84%	1112.8	2.77%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.025e+00	0.6564	631.0	7.46%	2955.4	7.36%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.007e+00	0.6654	41.0	0.49%	183.5	0.46%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-9.822e-01	0.6792	479.0	5.67%	2242.6	5.58%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-9.528e-01	0.6965	103.0	1.22%	474.8	1.18%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-9.368e-01	0.7047	827.0	9.78%	3892.7	9.69%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.289e-01	0.7074	173.0	2.05%	804.0	2.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.195e-01	0.7111	73.0	0.86%	335.1	0.83%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-9.147e-01	0.7115	644.0	7.62%	3029.5	7.54%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-8.965e-01	0.7216	3.0	0.04%	11.2	0.03%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-8.918e-01	0.7220	22.0	0.26%	99.0	0.25%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-8.728e-01	0.7328	246.0	2.91%	1152.8	2.87%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-8.653e-01	0.7353	431.0	5.10%	2027.8	5.05%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.573e-01	0.7382	75.0	0.89%	347.6	0.87%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-8.177e-01	0.7649	174.0	2.06%	816.9	2.03%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-8.176e-01	0.7649	431.0	5.10%	2032.4	5.06%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.137e-01	0.7649	673.0	7.96%	3179.4	7.92%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.128e-01	0.7649	68.0	0.80%	316.9	0.79%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-8.124e-01	0.7649	75.0	0.89%	349.2	0.87%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.088e-01	0.7649	202.0	2.39%	949.6	2.36%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.980e-01	0.7649	462.0	5.47%	2181.2	5.43%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.688e-01	0.7812	413.0	4.89%	1952.1	4.86%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-7.524e-01	0.7909	288.0	3.41%	1361.9	3.39%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.489e-01	0.7909	105.0	1.24%	494.8	1.23%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.416e-01	0.7933	141.0	1.67%	665.5	1.66%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.203e-01	0.8073	178.0	2.11%	842.1	2.10%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.120e-01	0.8108	514.0	6.08%	2438.7	6.07%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.980e-01	0.8191	369.0	4.37%	1752.0	4.36%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.937e-01	0.8195	114.0	1.35%	540.7	1.35%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.632e-01	0.8417	3.0	0.04%	13.6	0.03%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.575e-01	0.8432	86.0	1.02%	409.1	1.02%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.523e-01	0.8444	275.0	3.25%	1309.5	3.26%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.422e-01	0.8498	962.0	11.38%	4578.4	11.40%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.398e-01	0.8498	272.0	3.22%	1296.7	3.23%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.297e-01	0.8540	1123.0	13.29%	5346.6	13.31%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.285e-01	0.8540	58.0	0.69%	277.2	0.69%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.245e-01	0.8540	138.0	1.63%	659.3	1.64%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.193e-01	0.8540	378.0	4.47%	1803.4	4.49%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.064e-01	0.8613	49.0	0.58%	235.6	0.59%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-5.962e-01	0.8668	183.0	2.16%	876.8	2.18%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.847e-01	0.8736	332.0	3.93%	1588.7	3.96%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.742e-01	0.8797	86.0	1.02%	414.4	1.03%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.696e-01	0.8805	37.0	0.44%	179.0	0.45%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-5.571e-01	0.8883	590.0	6.98%	2822.2	7.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-5.501e-01	0.8913	17.0	0.20%	83.1	0.21%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.214e-01	0.9140	546.0	6.46%	2618.1	6.52%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.683e-01	0.9604	49.0	0.58%	242.6	0.60%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.612e-01	0.9638	163.0	1.93%	793.5	1.98%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.547e-01	0.9666	6.0	0.07%	31.5	0.08%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.496e-01	0.9682	302.0	3.57%	1462.4	3.64%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-4.294e-01	0.9844	1.0	0.01%	5.0	0.01%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.258e-01	0.9844	61.0	0.72%	303.5	0.76%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.258e-01	0.9844	61.0	0.72%	303.5	0.76%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.229e-01	0.9844	879.0	10.40%	4228.4	10.53%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.133e-01	0.9864	146.0	1.73%	716.8	1.78%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.071e-01	0.9891	34.0	0.40%	173.0	0.43%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-3.965e-01	0.9962	2.0	0.02%	11.4	0.03%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.905e-01	0.9962	56.0	0.66%	281.8	0.70%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.905e-01	0.9962	56.0	0.66%	281.5	0.70%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.804e-01	1.0000	88.0	1.04%	438.2	1.09%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.569e-01	1.0000	71.0	0.84%	357.7	0.89%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.404e-01	1.0000	463.0	5.48%	2254.7	5.61%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.136e-01	1.0000	276.0	3.27%	1358.7	3.38%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.015e-01	1.0000	83.0	0.98%	421.1	1.05%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.996e-01	1.0000	116.0	1.37%	583.6	1.45%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.874e-01	1.0000	28.0	0.33%	149.5	0.37%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.722e-01	1.0000	13.0	0.15%	73.7	0.18%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.632e-01	1.0000	22.0	0.26%	120.1	0.30%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.611e-01	1.0000	71.0	0.84%	366.3	0.91%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-2.607e-01	1.0000	31.0	0.37%	166.1	0.41%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.544e-01	1.0000	636.0	7.52%	3108.3	7.74%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.424e-01	1.0000	173.0	2.05%	870.6	2.17%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.204e-01	1.0000	218.0	2.58%	1094.0	2.72%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.169e-01	1.0000	811.0	9.59%	3963.6	9.87%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.095e-01	1.0000	106.0	1.25%	547.0	1.36%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.067e-01	1.0000	52.0	0.62%	277.9	0.69%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.875e-01	1.0000	78.0	0.92%	410.5	1.02%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.858e-01	1.0000	46.0	0.54%	249.1	0.62%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.853e-01	1.0000	518.0	6.13%	2561.8	6.38%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.849e-01	1.0000	414.0	4.90%	2057.6	5.12%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.843e-01	1.0000	44.0	0.52%	239.3	0.60%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.816e-01	1.0000	41.0	0.49%	224.3	0.56%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.662e-01	1.0000	762.0	9.01%	3748.4	9.33%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.653e-01	1.0000	226.0	2.67%	1146.5	2.85%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.530e-01	1.0000	884.0	10.46%	4343.4	10.81%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.522e-01	1.0000	100.0	1.18%	527.0	1.31%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.489e-01	1.0000	74.0	0.88%	396.8	0.99%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.335e-01	1.0000	31.0	0.37%	178.5	0.44%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.232e-01	1.0000	38.0	0.45%	216.6	0.54%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.232e-01	1.0000	38.0	0.45%	216.6	0.54%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.162e-01	1.0000	62.0	0.73%	341.9	0.85%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.142e-01	1.0000	512.0	6.06%	2562.6	6.38%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.044e-01	1.0000	8.0	0.09%	56.2	0.14%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.866e-02	1.0000	235.0	2.78%	1212.0	3.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-9.730e-02	1.0000	41.0	0.49%	236.3	0.59%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-9.675e-02	1.0000	27.0	0.32%	162.6	0.40%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.485e-02	1.0000	468.0	5.54%	2358.2	5.87%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-9.011e-02	1.0000	649.0	7.68%	3243.3	8.08%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.548e-02	1.0000	269.0	3.18%	1386.7	3.45%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-8.208e-02	1.0000	10.0	0.12%	70.6	0.18%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-8.051e-02	1.0000	649.0	7.68%	3250.8	8.09%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-7.840e-02	1.0000	280.0	3.31%	1444.6	3.60%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.586e-02	1.0000	384.0	4.54%	1958.7	4.88%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-7.093e-02	1.0000	829.0	9.81%	4133.2	10.29%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.464e-02	1.0000	27.0	0.32%	168.3	0.42%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.888e-02	1.0000	74.0	0.88%	418.3	1.04%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.770e-02	1.0000	541.0	6.40%	2742.2	6.83%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.455e-02	1.0000	10.0	0.12%	74.6	0.19%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-5.330e-02	1.0000	445.0	5.26%	2275.5	5.67%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-4.489e-02	1.0000	669.0	7.91%	3382.6	8.42%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.185e-02	1.0000	57.0	0.67%	336.6	0.84%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.963e-02	1.0000	290.0	3.43%	1521.8	3.79%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.490e-02	1.0000	16.0	0.19%	114.1	0.28%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.186e-02	1.0000	16.0	0.19%	115.3	0.29%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.148e-02	1.0000	471.0	5.57%	2428.7	6.05%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-2.969e-02	1.0000	997.0	11.79%	5006.3	12.47%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.586e-02	1.0000	1435.0	16.98%	7140.7	17.78%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.522e-02	1.0000	406.0	4.80%	2116.1	5.27%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-2.439e-02	1.0000	2087.0	24.69%	10289.9	25.62%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.366e-02	1.0000	448.0	5.30%	2327.2	5.79%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.131e-02	1.0000	1179.0	13.95%	5912.6	14.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.006e-02	1.0000	1336.0	15.81%	6678.1	16.63%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.778e-02	1.0000	539.0	6.38%	2790.8	6.95%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.503e-02	1.0000	95.0	1.12%	557.7	1.39%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.468e-02	1.0000	674.0	7.97%	3465.1	8.63%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.451e-02	1.0000	201.0	2.38%	1106.2	2.75%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.347e-02	1.0000	303.0	3.58%	1625.7	4.05%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.265e-02	1.0000	57.0	0.67%	357.9	0.89%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.213e-02	1.0000	11.0	0.13%	94.3	0.23%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.172e-02	1.0000	3.0	0.04%	39.6	0.10%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-9.491e-03	1.0000	1794.0	21.22%	8947.0	22.28%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-7.396e-03	1.0000	724.0	8.57%	3744.7	9.32%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.184e-03	1.0000	309.0	3.66%	1676.1	4.17%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.142e-03	1.0000	418.0	4.94%	2225.5	5.54%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.628e-03	1.0000	9.0	0.11%	86.5	0.22%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.781e-03	1.0000	179.0	2.12%	1022.8	2.55%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.581e-03	1.0000	169.0	2.00%	971.9	2.42%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.310e-03	1.0000	30.0	0.35%	221.0	0.55%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.301e-03	1.0000	801.0	9.48%	4149.4	10.33%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.046e-03	1.0000	450.0	5.32%	2406.3	5.99%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.752e-03	1.0000	212.0	2.51%	1199.2	2.99%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.171e-03	1.0000	65.0	0.77%	423.8	1.06%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.139e-03	1.0000	82.0	0.97%	523.2	1.30%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.709e-03	1.0000	518.0	6.13%	2778.7	6.92%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.674e-03	1.0000	238.0	2.82%	1354.7	3.37%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.657e-03	1.0000	273.0	3.23%	1535.5	3.82%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.518e-03	1.0000	206.0	2.44%	1190.3	2.96%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.117e-03	1.0000	3119.0	36.90%	15466.0	38.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.120e-04	1.0000	263.0	3.11%	1513.1	3.77%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-3.670e-04	1.0000	444.0	5.25%	2453.6	6.11%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.470e-04	1.0000	628.0	7.43%	3386.3	8.43%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.710e-04	1.0000	61.0	0.72%	435.8	1.09%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.440e-04	1.0000	2122.0	25.10%	10750.8	26.77%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.700e-04	1.0000	268.0	3.17%	1565.3	3.90%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.670e-04	1.0000	1410.0	16.68%	7295.6	18.17%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.360e-04	1.0000	84.0	0.99%	576.5	1.44%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-9.500e-05	1.0000	1027.0	12.15%	5427.2	13.51%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.600e-05	1.0000	292.0	3.45%	1716.1	4.27%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.000e-05	1.0000	100.0	1.18%	681.8	1.70%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.600e-05	1.0000	37.0	0.44%	314.5	0.78%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-3.000e-05	1.0000	196.0	2.32%	1218.8	3.03%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.900e-05	1.0000	24.0	0.28%	232.0	0.58%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.100e-05	1.0000	45.0	0.53%	376.7	0.94%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.000e-06	1.0000	218.0	2.58%	1366.2	3.40%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.000e-06	1.0000	211.0	2.50%	1330.6	3.31%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.000e-06	1.0000	41.0	0.49%	360.8	0.90%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.000e-06	1.0000	144.0	1.70%	970.5	2.42%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.000e-06	1.0000	144.0	1.70%	980.9	2.44%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.000e-06	1.0000	412.0	4.87%	2434.7	6.06%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.000e-06	1.0000	208.0	2.46%	1345.9	3.35%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	2317.0	27.41%	11993.9	29.86%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-0.000e+00	1.0000	1127.0	13.33%	6185.6	15.40%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-0.000e+00	1.0000	433.0	5.12%	2617.9	6.52%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	934.0	11.05%	5237.4	13.04%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	99.0	1.17%	787.3	1.96%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	613.0	7.25%	3630.8	9.04%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	477.0	5.64%	2945.9	7.34%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	1325.0	15.67%	7365.7	18.34%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	261.0	3.09%	1812.7	4.51%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	1609.0	19.03%	8860.2	22.06%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	2161.0	25.56%	11667.4	29.05%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	370.0	4.38%	2472.6	6.16%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-0.000e+00	1.0000	436.0	5.16%	2837.5	7.07%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	1602.0	18.95%	8902.3	22.17%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-0.000e+00	1.0000	1081.0	12.79%	6301.1	15.69%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	1518.0	17.96%	10141.3	25.25%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	1476.0	17.46%	9160.0	22.81%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	668.0	7.90%	5866.2	14.61%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	35.0	0.41%	682.8	1.70%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	227.0	2.69%	2540.2	6.32%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	479.0	5.67%	3643.9	9.07%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	244.0	2.89%	2722.9	6.78%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	1511.0	17.88%	8789.7	21.89%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	1511.0	17.88%	9075.0	22.60%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	931.0	11.01%	5905.8	14.70%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	1998.0	23.64%	11928.4	29.70%
