Package: snpsettest
Title: A Set-Based Association Test using GWAS Summary Statistics
Version: 0.1.2
Authors@R: c(
    person(given = "Jaehyun",
           family = "Joo",
           role = c("aut", "cre"),
           email = "jaehyunjoo@outlook.com"),
    person(given = "Blanca",
           family = "Himes",
           role = c("aut"),
           email = "bhimes@pennmedicine.upenn.edu"))
Description: The goal of 'snpsettest' is to provide simple tools that perform
             set-based association tests (e.g., gene-based association tests)
             using GWAS (genome-wide association study) summary statistics. A
             set-based association test in this package is based on the
             statistical model described in VEGAS (versatile gene-based
             association study), which combines the effects of a set of SNPs
             accounting for linkage disequilibrium between markers. This package
             uses a different approach from the original VEGAS implementation to
             compute set-level p values more efficiently, as described in
             <https://github.com/HimesGroup/snpsettest/wiki/Statistical-test-in-snpsettest>.
License: GPL (>= 3)
Depends: R (>= 3.1.0)
Imports: gaston, data.table, Rcpp
Suggests: tidyr, knitr, rmarkdown
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
URL: https://github.com/HimesGroup/snpsettest
BugReports: https://github.com/HimesGroup/snpsettest/issues
NeedsCompilation: yes
Packaged: 2023-09-09 17:04:05 UTC; jaehyun
Author: Jaehyun Joo [aut, cre],
  Blanca Himes [aut]
Maintainer: Jaehyun Joo <jaehyunjoo@outlook.com>
Repository: CRAN
Date/Publication: 2023-09-09 17:30:02 UTC
Built: R 4.4.3; x86_64-w64-mingw32; 2025-12-03 02:48:50 UTC; windows
Archs: x64
