Package: Rtapas
Title: Random Tanglegram Partitions
Version: 1.2
Authors@R: c(person("Mar", "Llaberia-Robledillo", role = c("aut", "cre", "cph"), email = "mar.llaberia@uv.es", comment = c(ORCID = "0000-0002-7989-796X")),
  person("Juan A.", "Balbuena", role = c("aut", "cph"), email = "j.a.balbuena@uv.es", comment = c(ORCID = "0000-0003-4006-1353")), 
  person("José Ignacio", "Lucas-Lledó", role = c("aut", "cph"), comment = c(ORCID = "0000-0001-6254-8942")),
  person("Oscar Alejandro", "Pérez-Escobar", role = c("aut", "cph"), comment = c(ORCID = "0000-0001-9166-2410"))
  )
Description: Applies a given global-fit method to random partial tanglegrams of a fixed size
             to identify the associations, terminals, and nodes that maximize phylogenetic
             (in)congruence. It also includes functions to compute more easily the confidence
             intervals of classification metrics and plot results, reducing computational time.
             See Llaberia-Robledillo et al., (2023) <doi:10.1093/sysbio/syad016>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: TRUE
Depends: phytools, parallel, R (>= 3.5.0)
Imports: ape, distory, paco, parallelly, stats, stringr, vegan
RoxygenNote: 7.3.1
NeedsCompilation: no
Suggests: testthat (>= 3.2.1.1)
Config/testthat/edition: 3
Packaged: 2024-06-12 11:43:29 UTC; Mar
Author: Mar Llaberia-Robledillo [aut, cre, cph]
    (<https://orcid.org/0000-0002-7989-796X>),
  Juan A. Balbuena [aut, cph] (<https://orcid.org/0000-0003-4006-1353>),
  José Ignacio Lucas-Lledó [aut, cph]
    (<https://orcid.org/0000-0001-6254-8942>),
  Oscar Alejandro Pérez-Escobar [aut, cph]
    (<https://orcid.org/0000-0001-9166-2410>)
Maintainer: Mar Llaberia-Robledillo <mar.llaberia@uv.es>
Repository: CRAN
Date/Publication: 2024-06-13 12:00:01 UTC
Built: R 4.4.3; ; 2025-10-21 14:21:08 UTC; windows
