pRolocdata
This is the released version of pRolocdata; for the devel version, see pRolocdata.
Data accompanying the pRoloc package
Bioconductor version: Release (3.23)
Mass-spectrometry based spatial proteomics data sets and protein complex separation data. Also contains the time course expression experiment from Mulvey et al. 2015.
Author: Laurent Gatto [aut]
, Oliver Crook [aut]
, Lisa Breckels [cre, aut]
Maintainer: Lisa Breckels <lms79 at cam.ac.uk>
citation("pRolocdata")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pRolocdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Arabidopsis_thaliana_Data, Drosophila_melanogaster_Data, ExperimentData, Homo_sapiens_Data, MassSpectrometryData, Mus_musculus_Data, Proteome, StemCell |
| Version | 1.50.0 |
| License | GPL-2 |
| Depends | R (>= 3.6.3), MSnbase |
| Imports | Biobase, utils |
| System Requirements | |
| URL | https://github.com/lgatto/pRolocdata |
| Bug Reports | https://github.com/lgatto/pRolocdata/issues |
See More
| Suggests | pRoloc(>= 1.13.8), testthat, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | bandle |
| Suggests Me | MSnbase, pRoloc, pRolocGUI, RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pRolocdata_1.50.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pRolocdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pRolocdata |
| Package Short Url | https://bioconductor.org/packages/pRolocdata/ |
| Package Downloads Report | Download Stats |