reactome.db
This is the released version of reactome.db; for the devel version, see reactome.db.
A set of annotation maps for reactome
Bioconductor version: Release (3.23)
A set of annotation maps for reactome assembled using data from reactome. This package has been created by a third-party developer, and is not affiliated with the Reactome team.
Author: Willem Ligtenberg
Maintainer: Willem Ligtenberg <willem at 42analytics.eu>
citation("reactome.db")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("reactome.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 1.96.0 |
| License | CC BY 4.0 |
| Depends | R (>= 2.7.0), methods, AnnotationDbi(>= 1.33.0) |
| Imports | methods, AnnotationDbi |
| System Requirements | |
| URL | |
| Bug Reports | https://gitlab.com/42analytics1/public/reactome.db-r-package/-/issues |
See More
| Suggests | RSQLite |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | attract, bioCancer, famat, methylGSA, ReactomePA, scTensor, signatureSearch, SMITE |
| Suggests Me | AnnotationDbi, BioCor, ChIPpeakAnno, FGNet, fgsea, gatom, MLP, PCAN, PhosR, rGREAT, safe, sparrow, BaseSet, PathwayVote, rliger |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | reactome.db_1.96.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/reactome.db/ |
| Package Downloads Report | Download Stats |