intensityFiles           package:cellHTS2           R Documentation

_R_e_t_r_i_e_v_e _t_h_e _c_o_n_t_e_n_t_s _o_f _t_h_e _i_n_p_u_t _f_i_l_e_s _u_s_e_d _t_o _g_e_n_e_r_a_t_e _a _g_i_v_e_n _c_e_l_l_H_T_S _o_b_j_e_c_t.

_D_e_s_c_r_i_p_t_i_o_n:

     These generic functions access different slots of an object
     derived from the 'cellHTS' class, which contain the original
     content of the input files used to create the object.

_U_s_a_g_e:

     intensityFiles(object)
     plateList(object)
     plateConf(object)
     screenLog(object)
     screenDesc(object)

_A_r_g_u_m_e_n_t_s:

  object: an object of class 'cellHTS'.

_V_a_l_u_e:

     'intensityFiles' returns a list, where each component contains a
     copy of the imported input data files.

     'plateList' returns a data.frame containing what was read from the
     plate list file,  plus a column 'status' of type character that
     contains the string "OK" if the data import appeared to have gone
     well, and the respective error or warning message otherwise. See
     'readPlateList' for more details.

     'plateConf' returns a data.frame that contains what was read from
     the plate configuration input file (except the first two header
     rows) during the screen configuration step. For more details see
     'configure'.

     'screenLog' returns a data.frame containing what was read from the
     screen log input file during the screen configuration step. See
     'configure' for more details.

     'screenDesc' returns an object of class 'character' that contains
     what was read from the screen description input file during the
     configuration of the 'cellHTS' object. See 'configure' for more
     details.

_A_u_t_h_o_r(_s):

     Ligia Bras ligia@ebi.ac.uk

_S_e_e _A_l_s_o:

     'cellHTS',  'readPlateList',  'configure',  'name'

