convertOldCellHTS          package:cellHTS2          R Documentation

_C_o_n_v_e_r_t _a_n _o_l_d _S_3 _c_l_a_s_s _c_e_l_l_H_T_S _o_b_j_e_c_t _t_o _t_h_e _n_e_w _S_4 _c_l_a_s_s _c_e_l_l_H_T_S _o_b_j_e_c_t

_D_e_s_c_r_i_p_t_i_o_n:

     Convert an old S3  'cellHTS' object (from the 'cellHTS' package) 
     into one or several S4 'cellHTS' objects (from the 'cellHTS2'
     package).

_U_s_a_g_e:

     convertOldCellHTS(oldObject)

_A_r_g_u_m_e_n_t_s:

oldObject: an S3 class 'cellHTS' object obtained using the package
          'cellHTS'.

_V_a_l_u_e:

     The function returns a list containing one or more 'cellHTS'
     objects. The element 'raw' contains the unnormalized data from
     'oldObject'. Depending on the state of 'oldObject' (on whether it
     is normalized and scored), the other components of this list can
     be: 'normalized', an S4 'cellHTS' object containing the normalized
     data, and  'scored', an S4 class 'cellHTS' object containing the
     scored data.

_A_u_t_h_o_r(_s):

     Ligia P. Bras ligia@ebi.ac.uk

_R_e_f_e_r_e_n_c_e_s:

     Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of
     cell-based RNAi screens, _Genome Biology_ *7*, R66.

_S_e_e _A_l_s_o:

     'updateCellHTS'

_E_x_a_m_p_l_e_s:

         data("oldKcViabSmall")
         out <-  convertOldCellHTS(oldKcViabSmall)
         names(out)
         out[["raw"]]

