spmCollection-class {KCsmart} | R Documentation

## Sample point matrix collection

### Description

A sample point matrix collection resulting from a call to calcSpmCollection

### Objects from the Class

Objects can not be created by the user directly but rather through calcSpmCollection.

### Slots

`annotation`:
  The annotation (containing the chromosome and position on the chromosome) for the sample points in the 'data' slot
`data`:
  A matrix with the kernel smoothed estimates of all samples
`cl`:
  A class vector indicating which samples belong to which class
`sampleDensity`:
  The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs.
`sigma`:
  The sigma used for the kernel to calculate the sample point matrix.
`mirrorLocs`:
  The mirror locations list used to calculate the sample point matrix

### Methods

show
  `signature(object = "spmCollection")`: ...

### Examples

    showClass("spmCollection")

[Package KCsmart version 2.3.2 Index]