rmaref.predict            package:RefPlus            R Documentation

_A _f_u_n_c_t_i_o_n _u_s_e_d _b_y _t_h_e _r_m_a_p_l_u_s _f_u_n_c_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Derive RMA+ expression. Used by 'rmaplus'. The function does not 
     background correct and normalize the probe-level data.

_U_s_a_g_e:

     rmaref.predict(Future, p.e)

_A_r_g_u_m_e_n_t_s:

  Future: An 'affybatch' object of the microarrays to be summarized  by
          the RMA+ method.

     p.e: The pre-stored list of the probe.effects.It is a probe.coefs
          object  of PLMset class in 'affyPLM' package.

_V_a_l_u_e:

     The RMA+ intensities of 'Future'.

_N_o_t_e:

     Use the 'rmaplus' function to normalize 'Future' to pre-stored 
     reference quantiles and correct the probe effects to obtain the
     RMA+  intensities.

_A_u_t_h_o_r(_s):

     Kai-Ming Chang(kaiming@gmail.com)

_R_e_f_e_r_e_n_c_e_s:

     Chang,K.M., Harbron,C., South,M.C. (2006) An Exploration of 
     Extensions to the RMA Algorithm. Available with the RefPlus
     package.

_S_e_e _A_l_s_o:

     'PLMset-class','rma.para', 'rmaplus'

