rmaref.predict {RefPlus} | R Documentation

## A function used by the rmaplus function

### Description

Derive RMA+ expression. Used by `rmaplus`. The function does not background correct and normalize the probe-level data.

### Usage

    rmaref.predict(Future, p.e)

### Arguments

`Future` | An `affybatch` object of the microarrays to be summarized by the RMA+ method.
`p.e` | The pre-stored list of the probe.effects.It is a probe.coefs object of PLMset class in `affyPLM` package.

### Value

The RMA+ intensities of `Future`.

### Note

Use the `rmaplus` function to normalize `Future` to pre-stored reference quantiles and correct the probe effects to obtain the RMA+ intensities.

### Author(s)

Kai-Ming Chang(kaiming@gmail.com)

### References

Chang,K.M., Harbron,C., South,M.C. (2006) An Exploration of Extensions to the RMA Algorithm. Available with the RefPlus package.

### See Also

`PLMset-class`,`rma.para`, `rmaplus`

[Package RefPlus version 1.12.1 Index]