readSmc {PGSEA} | R Documentation

## Read SMC files

### Description

This function reads in SMCs (simple molecular concepts) from individual text files.

### Usage

    readSmc(files)

### Arguments

`files` | a character vector of file names

### Value

A list of SMC objects

### Author(s)

Kyle Furge <kyle.furge@vai.org> and Karl Dykema <karl.dykema@vai.org>

### References

??

### See Also

`writeSmc`

### Examples

    datadir <- system.file("data", package = "PGSEA")
    sample <- readGmt(file.path(datadir, "sample.gmt"))
    str(sample)
    sample[[1]]@reference <- "fileName"

    ## Not run:
            writeSmc(sample[[1]])
            smc <- readSmc("fileName-0.txt")
    ## End(Not run)

[Package PGSEA version 1.10.0 Index]