base.stacking.thermodynamics {HELP} | R Documentation

## Base-stacking thermodynamic parameters

### Description

Unified thermodynamic parameters (delta-S and delta-H values) for nearest-neighbor base stacking calculations

### Usage

    data(base.stacking.thermodynamics)

### Format

A matrix with 2 columns and 16 rows. Column 1 indicates enthalpic parameters (dH) and column 2 indicates entropic parameters (dS). Rows indicate all possible 2bp combinations of "A", "T", "C", and "G" (e.g. "AC")

### Source

Allawi, H.T. and SantaLucia, J., Jr. (1997) Thermodynamics and NMR of internal G.T mismatches in DNA, Biochemistry, 36, 10581-10594.

### Examples

    data(base.stacking.thermodynamics)

[Package HELP version 1.0.0 Index]