Entry: base.stacking.thermodynamics
Aliases: base.stacking.thermodynamics
Keywords: datasets
Description: Base-stacking thermodynamic parameters
URL: ../../../library/HELP/html/base.stacking.thermodynamics.html

Entry: calcGC-methods
Aliases: calcGC-methods calcGC,missing-method calcGC,NULL-method calcGC,character-method calcGC,ExpressionSet-method
Keywords: methods
Description: Calculate GC percent (methods)
URL: ../../../library/HELP/html/calcGC-methods.html

Entry: calcGC
Aliases: calcGC
Keywords: arith utilities
Description: Calculate GC percent
URL: ../../../library/HELP/html/calcGC.html

Entry: calcPrototype-methods
Aliases: calcPrototype-methods calcPrototype,missing-method calcPrototype,ExpressionSet-method calcPrototype,vector-method calcPrototype,matrix-method
Keywords: methods
Description: Calculate prototype (methods)
URL: ../../../library/HELP/html/calcPrototype-methods.html

Entry: calcPrototype
Aliases: calcPrototype
Keywords: array
Description: Calculate prototype
URL: ../../../library/HELP/html/calcPrototype.html

Entry: calcTm-methods
Aliases: calcTm-methods calcTm,missing-method calcTm,NULL-method calcTm,character-method calcTm,ExpressionSet-method
Keywords: methods
Description: Calculate Tm (methods)
URL: ../../../library/HELP/html/calcTm-methods.html

Entry: calcTm
Aliases: calcTm
Keywords: arith utilities
Description: Calculate Tm
URL: ../../../library/HELP/html/calcTm.html

Entry: combineData-methods
Aliases: combineData-methods combineData,missing,missing,missing-method combineData,vector,missing,missing-method combineData,vector,missing,vector-method combineData,vector,vector,missing-method combineData,vector,vector,vector-method combineData,matrix,vector,missing-method combineData,matrix,vector,matrix-method combineData,ExpressionSet,missing,missing-method combineData,ExpressionSet,vector,missing-method
Keywords: methods
Description: Combine data (methods)
URL: ../../../library/HELP/html/combineData-methods.html

Entry: combineData
Aliases: combineData
Keywords: arith
Description: Combine data
URL: ../../../library/HELP/html/combineData.html

Entry: createWiggle-methods
Aliases: createWiggle-methods createWiggle,missing,missing-method createWiggle,ExpressionSet,missing-method createWiggle,ExpressionSet,matrix-method createWiggle,vector,matrix-method createWiggle,matrix,matrix-method
Keywords: methods
Description: Create wiggle track (methods)
URL: ../../../library/HELP/html/createWiggle-methods.html

Entry: createWiggle
Aliases: createWiggle
Keywords: print
Description: Create wiggle track
URL: ../../../library/HELP/html/createWiggle.html

Entry: exprs2-methods
Aliases: exprs2-methods exprs2,missing-method exprs2,ExpressionSet-method exprs2<-,ExpressionSet,missing-method exprs2<-,ExpressionSet,matrix-method
Keywords: methods
Description: Retrieve microarray data (for signal channel 2) from ExpressionSets (methods)
URL: ../../../library/HELP/html/exprs2-methods.html

Entry: exprs2
Aliases: exprs2 exprs2<-
Keywords: manip
Description: Retrieve microarray data (for signal channel 2) from ExpressionSets
URL: ../../../library/HELP/html/exprs2.html

Entry: fuzzyMatches-methods
Aliases: fuzzyMatches-methods fuzzyMatches,missing,missing-method fuzzyMatches,vector,missing-method fuzzyMatches,vector,NULL-method fuzzyMatches,vector,vector-method fuzzyMatches,NULL,vector-method
Keywords: methods
Description: Fuzzy matching (methods)
URL: ../../../library/HELP/html/fuzzyMatches-methods.html

Entry: fuzzyMatches
Aliases: fuzzyMatches
Keywords: manip
Description: Fuzzy matching
URL: ../../../library/HELP/html/fuzzyMatches.html

Entry: getFeatures-methods
Aliases: getFeatures-methods getFeatures,missing,missing-method getFeatures,ExpressionSet,missing-method getFeatures,ExpressionSet,NULL-method getFeatures,ExpressionSet,vector-method getFeatures,AnnotatedDataFrame,missing-method getFeatures,AnnotatedDataFrame,NULL-method getFeatures,AnnotatedDataFrame,vector-method getFeatures,vector,missing-method getFeatures,vector,NULL-method getFeatures,vector,vector-method getFeatures,matrix,vector-method
Keywords: methods
Description: Get features (methods)
URL: ../../../library/HELP/html/getFeatures-methods.html

Entry: getFeatures
Aliases: getFeatures
Keywords: attribute
Description: Get features (methods)
URL: ../../../library/HELP/html/getFeatures.html

Entry: getSamples-methods
Aliases: getSamples-methods getSamples,missing,missing-method getSamples,ExpressionSet,missing-method getSamples,ExpressionSet,NULL-method getSamples,ExpressionSet,vector-method getSamples,vector,missing-method getSamples,vector,NULL-method getSamples,vector,vector-method getSamples,matrix,missing-method getSamples,matrix,NULL-method getSamples,matrix,vector-method
Keywords: methods
Description: Get samples (methods)
URL: ../../../library/HELP/html/getSamples-methods.html

Entry: getSamples
Aliases: getSamples
Keywords: attribute
Description: Get samples
URL: ../../../library/HELP/html/getSamples.html

Entry: plotBins-methods
Aliases: plotBins-methods plotBins,missing,missing-method plotBins,matrix,missing-method plotBins,vector,missing-method plotBins,vector,ExpressionSet-method plotBins,vector,vector-method plotBins,ExpressionSet,missing-method plotBins,ExpressionSet,vector-method plotBins,ExpressionSet,ExpressionSet-method
Keywords: methods
Description: Plot bins (methods)
URL: ../../../library/HELP/html/plotBins-methods.html

Entry: plotBins
Aliases: plotBins
Keywords: hplot
Description: Plot bins
URL: ../../../library/HELP/html/plotBins.html

Entry: plotChip-methods
Aliases: plotChip-methods plotChip,missing,missing,missing-method plotChip,matrix,missing,missing-method plotChip,ExpressionSet,missing,missing-method plotChip,ExpressionSet,vector,missing-method plotChip,ExpressionSet,ExpressionSet,missing-method plotChip,vector,vector,ExpressionSet-method plotChip,vector,vector,vector-method
Keywords: methods
Description: Plot chip image (methods)
URL: ../../../library/HELP/html/plotChip-methods.html

Entry: plotChip
Aliases: plotChip
Keywords: hplot
Description: Plot chip image
URL: ../../../library/HELP/html/plotChip.html

Entry: plotFeature-methods
Aliases: plotFeature-methods plotFeature,missing,missing-method plotFeature,ExpressionSet,missing-method plotFeature,ExpressionSet,vector-method plotFeature,matrix,vector-method
Keywords: methods
Description: Plot feature versus two-color intensity (methods)
URL: ../../../library/HELP/html/plotFeature-methods.html

Entry: plotFeature
Aliases: plotFeature
Keywords: hplot
Description: Plot feature versus two-color intensity
URL: ../../../library/HELP/html/plotFeature.html

Entry: plotPairs-methods
Aliases: plotPairs-methods plotPairs,missing-method plotPairs,matrix-method plotPairs,ExpressionSet-method
Keywords: methods
Description: Plot tree-pairs (methods)
URL: ../../../library/HELP/html/plotPairs-methods.html

Entry: plotPairs
Aliases: plotPairs
Keywords: hplot
Description: Plot tree-pairs
URL: ../../../library/HELP/html/plotPairs.html

Entry: quantileNormalize-methods
Aliases: quantileNormalize-methods quantileNormalize,missing,missing-method quantileNormalize,matrix,missing-method quantileNormalize,vector,missing-method quantileNormalize,vector,ExpressionSet-method quantileNormalize,vector,vector-method quantileNormalize,ExpressionSet,missing-method quantileNormalize,ExpressionSet,vector-method quantileNormalize,ExpressionSet,ExpressionSet-method
Keywords: methods
Description: Quantile normalization (methods)
URL: ../../../library/HELP/html/quantileNormalize-methods.html

Entry: quantileNormalize
Aliases: quantileNormalize
Keywords: array
Description: Quantile normalization
URL: ../../../library/HELP/html/quantileNormalize.html

Entry: readDesign-methods
Aliases: readDesign-methods readDesign,missing,missing,missing-method readDesign,vector,missing,missing-method readDesign,vector,vector,missing-method readDesign,character,character,ExpressionSet-method readDesign,character,character,character-method
Keywords: methods
Description: Read NimbleGen design files (methods)
URL: ../../../library/HELP/html/readDesign-methods.html

Entry: readDesign
Aliases: readDesign
Keywords: file IO
Description: Read NimbleGen design files
URL: ../../../library/HELP/html/readDesign.html

Entry: readPairs-methods
Aliases: readPairs-methods readPairs,missing,missing,missing-method readPairs,vector,missing,missing-method readPairs,vector,vector,missing-method readPairs,character,character,ExpressionSet-method readPairs,character,character,character-method
Keywords: methods
Description: Read Nimblegen .pair files (methods)
URL: ../../../library/HELP/html/readPairs-methods.html

Entry: readPairs
Aliases: readPairs
Keywords: file IO
Description: Read Nimblegen .pair files
URL: ../../../library/HELP/html/readPairs.html

Entry: readSampleKey
Aliases: readSampleKey
Keywords: file IO
Description: Read sample key
URL: ../../../library/HELP/html/readSampleKey.html
