| PairComp-class {simpleaffy} | R Documentation |
Holds fold-change, ttest p-score and detection p-value calls(if used) between a pair of experimental factors.
means:"matrix" Mean values for each of the experimental factors.fc:"numeric" Fold change between the means.tt:"numeric" P-score between the factors.calls:"matrix" Detection p-values for each probeset on each array.group:"character" The name of the factor that was compared.members:"character" A list containing the two levels compared between.pData:"pData" The phenoData for the members that were compared.calculated.from:"ExpressionSet" The original expression set that was being compared.signature(x = "PairComp"): get the values for the specified gene(s).signature(x = "PairComp"): not supported.signature(object = "PairComp"): the detection.p.values.signature(object = "PairComp"): the fold-changes.signature(object = "PairComp"): the name of the group that was compared.signature(object = "PairComp"): the means of the two experimental factors that were compared.signature(object = "PairComp"): the members of that group that were compared.signature(object = "PairComp"): Take a PairComp object and filter it to yield probesets that pass the specified criteria.signature(object = "PairComp"): the results of a ttest between groups.signature(object = "pData"): The phenoData from the members that were compared.signature(object = "ExpressionSet"): The original expression set.Crispin Miller