makeTable             package:VanillaICE             R Documentation

_M_a_k_e_s _a _t_a_b_l_e _o_f _s_u_m_m_a_r_y _s_t_a_t_i_s_t_i_c_s _f_o_r _t_h_e _b_r_e_a_k_p_o_i_n_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Calculate summary statistics of the breakpoints (mean, median, sd)
     for each chromosome.  The average, median, and sd are also
     computed across chromosomes.

_U_s_a_g_e:

     makeTable(object, state, by, unit = 1000, digits = 3)

_A_r_g_u_m_e_n_t_s:

  object: object of class 'HmmPredict'

   state: a character string for the hidden state to make the summary
          table of

      by: not useful at this point.  Eventually would be nice to split
          by sample as well as by chromosome

    unit: numeric.  For kb, set unit = 1000.  For Mb, set unit = 1e6,
          etc.

  digits: for rounding

_V_a_l_u_e:

     matrix

_A_u_t_h_o_r(_s):

     R. Scharpf

_S_e_e _A_l_s_o:

     'summary'

_E_x_a_m_p_l_e_s:

     data(fit)
     makeTable(fit, state="D")

