makeTable {VanillaICE} | R Documentation

## Makes a table of summary statistics for the breakpoints

### Description

Calculate summary statistics of the breakpoints (mean, median, sd) for each chromosome. The average, median, and sd are also computed across chromosomes.

### Usage

    makeTable(object, state, by, unit = 1000, digits = 3)

### Arguments

`object` | object of class `HmmPredict`
`state` | a character string for the hidden state to make the summary table of
`by` | not useful at this point. Eventually would be nice to split by sample as well as by chromosome
`unit` | numeric. For kb, set unit = 1000. For Mb, set unit = 1e6, etc.
`digits` | for rounding

### Value

matrix

### Author(s)

R. Scharpf

### See Also

`summary`

### Examples

    data(fit)
    makeTable(fit, state="D")

[Package VanillaICE version 1.2.0 Index]