convertOldCellHTS {cellHTS2} | R Documentation

## Convert an old S3 class cellHTS object to the new S4 class cellHTS object

### Description

Convert an old S3 class `cellHTS` object obtained using `cellHTS` package to new S4 class `cellHTS` object(s).

### Usage

    convertOldCellHTS(oldObject)

### Arguments

`oldObject` | a S3 class `cellHTS` object obtained using the package `cellHTS`.

### Details

This function converts an old S3 `cellHTS` class object called `oldObjt` into S4 class `cellHTS` object(s).

### Value

The function returns a list containing at least one `cellHTS` objects named "raw" which corresponds to a unnormalized `cellHTS` object (i.e. comprising the raw data stored in `oldObject`). Depending on the state of `oldObject` (normalized and scored), the other components of this list can be: `"normalized"`: a S4 class `cellHTS` object containing normalized data, and `"scored"`: a S4 class `cellHTS` object containing scored data.

### Author(s)

Ligia P. Bras ligia@ebi.ac.uk

### References

Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.

### See Also

### Examples

        data(oldKcViabSmall)
        out <-  convertOldCellHTS(oldKcViabSmall)
        x <- out[["raw"]]
        x

[Package cellHTS2 version 2.2.5 Index]