| cdfenvs {altcdfenvs} | R Documentation |
A set of functions to handle cdfenvs
wrapCdfEnvAffy(cdfenv, nrow.chip, ncol.chip, chiptype, check = TRUE,
verbose = FALSE)
getCdfEnvAffy(abatch)
buildCdfEnv.matchprobes(matches, ids, probes.pack, abatch=NULL,
nrow.chip=NULL, ncol.chip=NULL, chiptype=NULL,
mm=NA, simplify = TRUE,
x.colname = "x", y.colname = "y", verbose=FALSE)
abatch |
an AffyBatch |
cdfenv |
A cdfenv environment |
check |
perform consistency check or not |
chiptype |
A name for the chip type |
ids |
a vector of probe set identifiers for the matches |
matches |
a list as returned by the function
matchprobes |
mm |
The value to store for MMs |
ncol.chip |
The number of columns for the chip type |
nrow.chip |
The number of rows for the chip type |
probes.pack |
The name of the probe package |
simplify |
Simplify the environment created by removing the ids without any matching probe |
x.colname, y.colname |
see the getxy.probeseq |
verbose |
verbosity (TRUE or FALSE) |
An instance of class CdfEnvAffy.
## See the main vignette