distance {VanillaICE} | R Documentation

## Accessor for distance

### Description

Indicates whether distance between SNPs (in base pairs) was used to estimate transition probabilities for the HMM

### Usage

    distance(object)

### Arguments

`object` | one of the HMM classes defined in `ICE`

### Details

### Value

Logical: if TRUE, the distance between SNPs was used to derive a SNP-specific transition probability matrix.

### Note

### Author(s)

### References

RB Scharpf et al. (2007), Department of Biostatistics Working Papers, Working Paper 136

MA Newton et al. (1998) On the statistical analysis of allelic-loss data. Stat Med 17(13):1425-45

### See Also

### Examples

[Package VanillaICE version 1.0.2 Index]