getLohProbability {VanillaICE} | R Documentation

## Emission probabilities for LOH

### Description

Specifies default emission probabilities for loss of heterozygosity (LOH). We define LOH as a sequence of homozygous genotypes longer than what we would expect to observe by chance.

### Usage

    getLohProbability(object)

### Arguments

`object` | Object of one of the HMM classes defined in `ICE`

### Details

If necessary, more details than the description above

### Value

A matrix of default values for the LOH probability

### Note

### Author(s)

### References

### See Also

### Examples

[Package VanillaICE version 1.0.2 Index]