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| colon.normal | Gene expression data |
| colon.pheno | Covariate information for the colon data |
| colon.tumour | Gene expression data |
| GAGO | Multiple testing on the GO graph |
| getFocus | Multiple testing on the GO graph |
| GlobalAncova | Global test for differential gene expression |
| GlobalAncova,matrix,formula,formula,ANY,missing,missing,missing-method | Methods for Function GlobalAncova |
| GlobalAncova,matrix,formula,missing,ANY,missing,missing,character-method | Methods for Function GlobalAncova |
| GlobalAncova,matrix,missing,missing,missing,ANY,ANY,missing-method | Methods for Function GlobalAncova |
| GlobalAncova-methods | Methods for Function GlobalAncova |
| GlobalAncova.closed | Closed testing procedure for testing several groups of genes using GlobalAncova |
| GlobalAncova.closed,matrix,list,formula,formula,ANY,missing,missing,missing-method | Methods for Function GlobalAncova.closed |
| GlobalAncova.closed,matrix,list,formula,missing,ANY,missing,missing,character-method | Methods for Function GlobalAncova.closed |
| GlobalAncova.closed,matrix,list,missing,missing,missing,ANY,ANY,missing-method | Methods for Function GlobalAncova.closed |
| GlobalAncova.closed-methods | Methods for Function GlobalAncova.closed |
| GlobalAncova.decomp | GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates |
| makeGOstructure | Multiple testing on the GO graph |
| pair.compare | Pairwise comparisons of factor levels within GlobalAncova |
| pathways | Cancer related pathways |
| phenodata | Covariate information for the van t'Veer data |
| Plot.all | Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic |
| Plot.genes | Genes Plot for Global Ancova |
| Plot.genes,matrix,formula,formula,ANY,missing,missing,missing-method | Methods for Function Plot.genes |
| Plot.genes,matrix,formula,missing,ANY,missing,missing,character-method | Methods for Function Plot.genes |
| Plot.genes,matrix,missing,missing,missing,ANY,ANY,missing-method | Methods for Function Plot.genes |
| Plot.genes-methods | Methods for Function Plot.genes |
| Plot.sequential | Visualization of sequential decomposition |
| Plot.subjects | Subjects Plot for GlobalAncova |
| Plot.subjects,matrix,formula,formula,ANY,missing,missing,missing-method | Methods for Function Plot.subjects |
| Plot.subjects,matrix,formula,missing,ANY,missing,missing,character-method | Methods for Function Plot.subjects |
| Plot.subjects,matrix,missing,missing,missing,ANY,ANY,missing-method | Methods for Function Plot.subjects |
| Plot.subjects-methods | Methods for Function Plot.subjects |
| vantVeer | Gene expression data |