| cViz {ChromoViz} | R Documentation |
ChromoViz main function
cViz(feature, bandPosFile, refSp = "human")
feature |
gene expression |
bandPosFile |
band position |
refSp |
the name of species |
A wrapper html report, index.html, is generated.
An index.html is generated incorporating individual chromosome html with SVG figures.
Jihoon Kim <jihoon@stat.wisc.edu>
Kim et al. ChromoViz: multimodal visualization of gene expression data onto chromosome using scalable vector graphics, Bioinformatics, May 1:1191-2, 2004
#library( ChromoViz )
#
#Onto human chromosome
#data( exprStemcell )
#data( humanBand )
#SET OUTPUT DIRECTORY ex> setwd("C:\temp")
#cViz( exprStemcell, humanBand, refSp="human")