# Image processing and analysis toolkit for R

## Documentation for package `EBImage' version 2.0.1

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

A B C D E F G H I M N O P R S T U W misc

## -- --

EBImage-package | Package overview and changelog

## -- A --

affinet | Image transformation: rotation, resize, etc.
animate | Interactive image display
assert | Image creation, copying and assertion
athresh | Image and color channel thresholding

## -- B --

blur | Enhancing image and image colors

## -- C --

cgamma | Enhancing image and image colors
channel | Color conversion
choose.image | Image I/O
closing | Morphological operations on images
colorMode | Image class defintion and accessor methods
combine | Image creation, copying and assertion
compression | Image class defintion and accessor methods
contrast | Enhancing image and image colors
copy | Image creation, copying and assertion
cthresh | Image and color channel thresholding

## -- D --

denoise | Enhancing image and image colors
despeckle | Enhancing image and image colors
dilate | Morphological operations on images
display | Interactive image display
distmap | Distance map transform of binary images

## -- E --

EBImage | Package overview and changelog
edge | Segmentation and edge detection
enhance | Enhancing image and image colors
equalize | Enhancing image and image colors
erode | Morphological operations on images

## -- F --

features | Detection of objects from integer-based segmented images
fileName | Image class defintion and accessor methods
fill | Segmentation and edge detection
flip | Image transformation: rotation, resize, etc.
flop | Image transformation: rotation, resize, etc.

## -- G --

gblur | Enhancing image and image colors
getObjects | Detection of objects from integer-based segmented images
Grayscale | Image class defintion and accessor methods

## -- H --

header | Image creation, copying and assertion
hist.Image | Generic methods for objects of class Image

## -- I --

Image | Image creation, copying and assertion
Image-class | Image class defintion and accessor methods
image.Image | Generic methods for objects of class Image
imageData | Image class defintion and accessor methods
is.Image | Image creation, copying and assertion

## -- M --

matchObjects | Matches detected objects in two images
mediansmooth | Enhancing image and image colors
modulate | Enhancing image and image colors
morphKern | Morphological operations on images

## -- N --

negate | Functions to normalize images
noise | Enhancing image and image colors
normalize | Functions to normalize images
normalize2 | Functions to normalize images

## -- O --

opening | Morphological operations on images

## -- P --

paintObjects | Marking detected objects in reference images
print.Image | Generic methods for objects of class Image
propagate | Voronoi-based segmentation on image manifolds

## -- R --

read.image | Image I/O
resample | Image transformation: rotation, resize, etc.
resize | Image transformation: rotation, resize, etc.
resolution | Image class defintion and accessor methods
rmObjects | Delete objects
rotate | Image transformation: rotation, resize, etc.

## -- S --

sampleFilter | Image class defintion and accessor methods
segment | Segmentation and edge detection
sharpen | Enhancing image and image colors
stackObjects | Detection of objects from integer-based segmented images
stopIfNotImage | Image creation, copying and assertion

## -- T --

thresh | Image and color channel thresholding
tile | Generates a tiled image from a stack of images
TrueColor | Image class defintion and accessor methods

## -- U --

umask | Enhancing image and image colors

## -- W --

watershed | Watershed transformation and watershed based object detection
write.image | Image I/O

## -- misc --

[,Image-method | Generic methods for objects of class Image