| analysePlate |
Apply a statistic to the data from each well in a plate |
| appendGates |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| appendGates, gateSet_method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| appendGates,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| appendGates,gateSet-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| applyGate |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| applyGate,cytoFrame,character-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| applyGate,cytoFrame,gate-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| applyGate,cytoFrame,gateSet-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| applyGate,cytoFrame,logical-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| applyGate,cytoFrame,numeric-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| applyGate,matrix,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| applyGate,matrix,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| as.all |
Coercion without introduction of NAs |
| as.gateSet |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| as.gateSet,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| cframe |
A sample cytoFrame object - German Cancer Research Center Heidelberg - |
| colnames,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| colnames,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| colnames<-,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| colnames<-,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| combineFrames |
Combine the cytoFrames within a cytoSet according to some grouping factor |
| combineGates |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| csApply |
Apply a function over the intensities in a cytoSet |
| cset |
A sample cytoSet object - German Cancer Research Center Heidelberg - |
| cytoFrame |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| cytoFrame-class |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| cytoSet |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| cytoSet-class |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| ddCt |
Apply the ddCt method for a given data set |
| ddCtSet-class |
Class for storage of relative rtPCR results |
| description,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| description<-,cytoFrame,character-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| devDims |
Device Dimensions for plate plots |
| devRes |
Resolution of current plotting device |
| drawGate |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| drawGate,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| drawGate,matrix-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| eListWrite |
Write the eList |
| exprs,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| exprs,ddCtSet-method |
Class for storage of relative rtPCR results |
| exprs<-,cytoFrame,matrix-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| exprs<-,ddCtSet,matrix-method |
Class for storage of relative rtPCR results |
| gate |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| gate,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| gate-class |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| gate<-,cytoFrame,gate-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| gate<-,cytoFrame,gateSet-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| gateSet |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| gateSet-class |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| getPradaPar |
Set and query global parameters for functions in the prada package |
| names,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| names,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| names<-,gate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
| names<-,gateSet-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
| ncol,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| nrow,cytoFrame-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| pData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| phenoData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| phenoData<-,cytoSet,phenoData-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| plot,cytoFrame,missing-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
| plot,cytoSet,missing-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| plotNorm2 |
Plot fitted bivariate normal distribution. |
| plotPlate |
Plot a well statistic for microtiter plates. |
| progress |
A simple tcltk progress window |