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| boot2fuzzy | function to write MapleTree files for viewing bootstrap estimated cluster membership probabilities based on hopach clustering results |
| boothopach | functions to perform non-parametric bootstrap resampling of hopach clustering results |
| bootmedoids | functions to perform non-parametric bootstrap resampling of hopach clustering results |
| bootplot | function to make a barplot of bootstrap estimated cluster membership probabilities |
| correlationordering | function to compute empirical correlation between distance in a list and distance by a metric |
| dissmatrix | functions to compute pair wise distances between vectors |
| dissvector | functions to compute pair wise distances between vectors |
| distancematrix | functions to compute pair wise distances between vectors |
| distancevector | functions to compute pair wise distances between vectors |
| dplot | function to make a pseudo-color image of a distance matrix with the row and column ordering based on HOPACH clustering results. |
| golub | Gene expression dataset from Golub et al. (1999) |
| hopach | function to perform HOPACH hierarchical clustering |
| hopach2tree | function to write MapleTree files for viewing hopach hierarchical clustering results |
| improveordering | function to compute empirical correlation between distance in a list and distance by a metric |
| labelstomss | Functions to compute silhouettes and split silhouettes |
| labelstosil | Functions to compute silhouettes and split silhouettes |
| makeoutput | function to write a text file with hopach output |
| makeTree | function to write MapleTree files for viewing hopach hierarchical clustering results |
| medstosil | Functions to compute silhouettes and split silhouettes |
| msscheck | Functions to compute silhouettes and split silhouettes |
| prune | function to prune a HOPACH tree. |
| silcheck | Functions to compute silhouettes and split silhouettes |
| vectmatrix | functions to compute pair wise distances between vectors |