as.matrix {limma} | R Documentation

## Turn a Microarray Data Object into a Matrix

### Description

Turn a microarray data object into a numeric matrix by extracting the expression values.

### Usage

    ## S3 method for class 'MAList':
    as.matrix(x)

### Arguments

`x` | an object of class `RGList`, `MAList`, `MArrayLM`, `marrayNorm` or `exprSet`

### Details

These methods extract the matrix of log-ratios, for `MAList` or `marrayNorm` objects, or the matrix of expression values for `exprSet` objects. For `MArrayLM` objects, the matrix of fitted coefficients is extracted.

These methods involve loss of information, so the original data object is not recoverable.

### Value

A numeric matrix.

### Author(s)

Gordon Smyth

### See Also

`as.matrix` in the base package.

02.Classes gives an overview of data classes used in LIMMA.

[Package limma version 2.2.0 Index]