| aaMap |
names and characteristics of amino acids |
| abstract |
Class MIAME, a class for storing microarray experiment information |
| abstract,exprSet-method |
Class MIAME, a class for storing microarray experiment information |
| abstract,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
| addNonExisting |
Add menu items to an existing/new menu of a window |
| addPDF2Vig |
Add menu items to an existing/new menu of a window |
| addVig2Menu |
Add menu items to an existing/new menu of a window |
| addVig4Unix |
Add menu items to an existing/new menu of a window |
| addVig4Win |
Add menu items to an existing/new menu of a window |
| addVigs2WinMenu |
Add menu items to an existing/new menu of a window |
| aggenv |
Class aggregator, a class of aggregators |
| aggenv,aggregator-method |
Class aggregator, a class of aggregators |
| aggfun |
Class aggregator, a class of aggregators |
| aggfun,aggregator-method |
Class aggregator, a class of aggregators |
| Aggregate |
A simple aggregation mechanism. |
| aggregator-class |
Class aggregator, a class of aggregators |
| annotation |
Class exprSet, a class for microarray data, and methods for processing them |
| annotation,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| annotation<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| as.data.frame.exprSet |
converts an exprSet to a dataframe |
| characterORMIAME |
Class characterORMIAME, a class to make older versions compatible |
| characterORMIAME-class |
Class characterORMIAME, a class to make older versions compatible |
| combine |
Combine Data into a single object. |
| combine,eSet,ANY-method |
Class "eSet": a new exprSet class |
| combine,eSet,eSet-method |
Class "eSet": a new exprSet class |
| combine,phenoData,ANY-method |
Combine Data into a single object. |
| combine,phenoData,phenoData-method |
Combine Data into a single object. |
| container-class |
container: a class that specializes the list construct of R to provide content and access control |
| content |
container: a class that specializes the list construct of R to provide content and access control |
| content,container-method |
container: a class that specializes the list construct of R to provide content and access control |
| contents |
Function to retrieve contents of environments |
| contents,environment-method |
Function to retrieve contents of environments |
| copyEnv |
List-Environment interactions |
| copySubstitute |
Copy between connections or from an to files with configure-like name-value substitution |
| createPackage |
Create a package directory from a template, with symbol-value substitution |
| eList |
Class "eSet": a new exprSet class |
| eList,eSet-method |
Class "eSet": a new exprSet class |
| eList<-,eSet,environment-method |
Class "eSet": a new exprSet class |
| eList<-,eSet,exprList-method |
Class "exprList" a class union of a list and an environment. |
| eList<-,eSet,list-method |
Class "eSet": a new exprSet class |
| esApply |
Apply for the expression data in an exprSet |
| eset |
A dataset of class exprSet |
| eSet-class |
Class "eSet": a new exprSet class |
| expinfo |
Class MIAME, a class for storing microarray experiment information |
| expinfo,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
| exprList-class |
Class "exprList" a class union of a list and an environment. |
| exprMatrix-class |
Class union for objects behaving like a matrix |
| exprs |
Class exprSet, a class for microarray data, and methods for processing them |
| exprs,eSet-method |
Class "eSet": a new exprSet class |
| exprs,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| exprs2excel |
Class exprSet, a class for microarray data, and methods for processing them |
| exprs2excel,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| exprs<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| exprSet |
Class exprSet, a class for microarray data, and methods for processing them |
| exprSet-class |
Class exprSet, a class for microarray data, and methods for processing them |
| geneCov |
A subset of some expression data. |
| geneData |
A subset of some expression data. |
| geneNames |
Class exprSet, a class for microarray data, and methods for processing them |
| geneNames,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| geneNames<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| getExpData |
Class "eSet": a new exprSet class |
| getExpData,eSet,character-method |
Class "eSet": a new exprSet class |
| getPkgVigs |
A function to list PDF files for a package |
| initfun |
Class aggregator, a class of aggregators |
| initfun,aggregator-method |
Class aggregator, a class of aggregators |
| iter |
Methods for the generic iter. |
| iter,exprSet,character,function-method |
Methods for the generic iter. |
| iter,exprSet,missing,function-method |
Methods for the generic iter. |
| iter,exprSet,missing,list-method |
Methods for the generic iter. |
| iter-methods |
Methods for the generic iter. |
| normControls |
Class MIAME, a class for storing microarray experiment information |
| normControls,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
| notes |
Class exprSet, a class for microarray data, and methods for processing them |
| notes,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| notes<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| package.version |
A function to report package versions |
| pData |
Class exprSet, a class for microarray data, and methods for processing them |
| pData,eSet-method |
Class "eSet": a new exprSet class |
| pData,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| pData,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
| pData<-,eSet-method |
Class "eSet": a new exprSet class |
| pData<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| pData<-,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
| phenoData |
Class exprSet, a class for microarray data, and methods for processing them |
| phenoData,eSet-method |
Class "eSet": a new exprSet class |
| phenoData,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| phenoData-class |
Class phenoData, a class for patient or experiment level data. |
| phenoData<-,eSet,phenoData-method |
Class "eSet": a new exprSet class |
| phenoData<-,exprSet,phenoData-method |
Class exprSet, a class for microarray data, and methods for processing them |
| phenoData<-,pheno |
Class phenoData, a class for patient or experiment level data. |
| preproc |
Class MIAME, a class for storing microarray experiment information |
| preproc,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
| sampleNames |
Class exprSet, a class for microarray data, and methods for processing them |
| sampleNames,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| sampleNames<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| samples |
Class MIAME, a class for storing microarray experiment information |
| samples,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
| se.exprs |
Class exprSet, a class for microarray data, and methods for processing them |
| se.exprs,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| se.exprs<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| show,container-method |
container: a class that specializes the list construct of R to provide content and access control |
| show,eSet-method |
Class "eSet": a new exprSet class |
| show,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| show,MIAME-method |
Class MIAME, a class for storing microarray experiment information |
| show,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
| split,exprSet,vector-method |
Class exprSet, a class for microarray data, and methods for processing them |
| split,phenoData,vector-method |
Class phenoData, a class for patient or experiment level data. |
| [,container-method |
container: a class that specializes the list construct of R to provide content and access control |
| [,eSet-method |
Class "eSet": a new exprSet class |
| [,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| [,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
| [[,container-method |
container: a class that specializes the list construct of R to provide content and access control |
| [[,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| [[,phenoData-method |
Class phenoData, a class for patient or experiment level data. |
| [[<-,container-method |
container: a class that specializes the list construct of R to provide content and access control |
| [[<-,exprSet-method |
Class exprSet, a class for microarray data, and methods for processing them |
| [[<-,phenoData-method |
Class phenoData, a class for patient or experiment level data. |