| homoPS-class {AnnBuilder} | R Documentation |
A class to present data for HomologGene percent similarity data
Objects can be created by calls of the form new("homoPS", ...).
psOrg:"character" the
scientific name of the organism of interestpsLL:"character" the LocusLink
id of the gene of interestpsType:"character" the type of
similarity. Valid values include B - a recipiprocal best best
between 3 or more organisms, b - a reciprocal best match, and c -
a curated homology relationshipps:"numeric" percent
similarity valuepsURL:"character" the URL for
curated homology relationshipsignature(object = "homoPS"): the get function for
slot pssignature(object = "homoPS"): the get function
for slot psLLsignature(object = "homoPS"): the get function
for slot psOrgsignature(object = "homoPS"): the get function
for slot psTypesignature(object = "homoPS"): the get function
for slot psURLThis function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinfomatics functionalities throug R
Jianhua Zhang
ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README
new("homoPS", ps = 82.3, psLL = "2324853", psOrg = "Homo sapins",
psType = "B", psURL = "")