microRNAome
This is the released version of microRNAome; for the devel version, see microRNAome.
SummarizedExperiment for the microRNAome project
Bioconductor version: Release (3.23)
This package provides a SummarizedExperiment object of read counts for microRNAs across tissues, cell-types, and cancer cell-lines. The read count matrix was prepared and provided by the author of the study: Towards the human cellular microRNAome.
Author: Matthew N. McCall <mccallm at gmail.com>, Marc K. Halushka <mhalush1 at jhmi.edu>, Arun H. Patil <arun26feb at gmail.com>
Maintainer: Matthew N. McCall <mccallm at gmail.com>
citation("microRNAome")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("microRNAome")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | CancerData, CellCulture, ExperimentData, RNASeqData, SequencingData, miRNAData |
| Version | 1.34.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.5.0), SummarizedExperiment |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocGenerics, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | microRNAome_1.34.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/microRNAome |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/microRNAome |
| Package Short Url | https://bioconductor.org/packages/microRNAome/ |
| Package Downloads Report | Download Stats |