biotmleData
This is the released version of biotmleData; for the devel version, see biotmleData.
Example experimental microarray data set for the "biotmle" R package
Bioconductor version: Release (3.23)
Microarray data (from the Illumina Ref-8 BeadChips platform) and phenotype-level data from an epidemiological investigation of benzene exposure, packaged using "SummarizedExperiemnt", for use as an example with the "biotmle" R package.
Author: Nima Hejazi [aut, cre]
Maintainer: Nima Hejazi <nhejazi at berkeley.edu>
citation("biotmleData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biotmleData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, ExperimentData, GeneExpression, Microarray, RNASeq, Sequencing |
| Version | 1.36.0 |
| License | file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | Biobase, SummarizedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | biotmle |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biotmleData_1.36.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/biotmleData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biotmleData |
| Package Short Url | https://bioconductor.org/packages/biotmleData/ |
| Package Downloads Report | Download Stats |