bcellViper
This is the released version of bcellViper; for the devel version, see bcellViper.
Human B-cell transcriptional interactome and normal human B-cell expression data
Bioconductor version: Release (3.23)
This package provides a human B-cell context-specific transcriptional regulatory network and a human normal B-cells dataset for the examples in package viper.
Author: Mariano Javier Alvarez
Maintainer: Mariano Javier Alvarez <malvarez at c2b2.columbia.edu>
citation("bcellViper")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bcellViper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bcellViper")| Using bcellViper | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, Genome, Homo_sapiens_Data |
| Version | 1.48.0 |
| License | GPL (>=2) |
| Depends | R (>= 2.14.0), Biobase, methods |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | dorothea |
| Suggests Me | GenomicSuperSignature, pageRank, viper |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bcellViper_1.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/bcellViper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bcellViper |
| Package Short Url | https://bioconductor.org/packages/bcellViper/ |
| Package Downloads Report | Download Stats |