antiProfilesData
This is the released version of antiProfilesData; for the devel version, see antiProfilesData.
Normal colon and cancer preprocessed affy data for antiProfile building.
Bioconductor version: Release (3.23)
Colon normal tissue and cancer samples used in Corrada Bravo, et al. gene expression anti-profiles paper: BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272. Measurements are z-scores obtained from the GeneExpression Barcode in the 'frma' package
Author: Hector Corrada Bravo, Matthew McCall and Rafael A. Irizarry
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
citation("antiProfilesData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("antiProfilesData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CancerData, ColonCancerData, ExperimentData, MicroarrayData, Tissue |
| Version | 1.48.0 |
| License | Artistic-2.0 |
| Depends | Biobase |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | frma, GEOquery, GEOmetadb |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | antiProfiles, epivizr, epivizrChart, messina |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | antiProfilesData_1.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/antiProfilesData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/antiProfilesData |
| Package Short Url | https://bioconductor.org/packages/antiProfilesData/ |
| Package Downloads Report | Download Stats |