flowClust
This is the released version of flowClust; for the devel version, see flowClust.
Clustering for Flow Cytometry
Bioconductor version: Release (3.23)
Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.
Author: Raphael Gottardo, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <greg at ozette.ai>
Maintainer: Greg Finak <greg at ozette.ai>, Mike Jiang <mike at ozette.ai>
citation("flowClust")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowClust")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowClust")| Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package | HTML | R Script |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | Clustering, FlowCytometry, ImmunoOncology, Software, Visualization |
| Version | 3.50.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (18.5 years) |
| License | MIT |
| Depends | R (>= 2.5.0) |
| Imports | BiocGenerics, methods, Biobase, graph, flowCore, parallel |
| System Requirements | GNU make |
| URL |
See More
| Suggests | testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto, flowStats(>= 4.7.1) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | cyanoFilter, flowTrans, openCyto |
| Suggests Me | BiocGenerics, flowTime, segmenTier |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowClust_3.50.0.tar.gz |
| Windows Binary (x86_64) | flowClust_3.50.0.zip |
| macOS Binary (big-sur-x86_64) | flowClust_3.50.0.tgz |
| macOS Binary (sonoma-arm64) | flowClust_3.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowClust |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowClust |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowClust/ |
| Package Short Url | https://bioconductor.org/packages/flowClust/ |
| Package Downloads Report | Download Stats |