DelayedDataFrame
This is the released version of DelayedDataFrame; for the devel version, see DelayedDataFrame.
Delayed operation on DataFrame using standard DataFrame metaphor
Bioconductor version: Release (3.23)
Based on the standard DataFrame metaphor, we are trying to implement the feature of delayed operation on the DelayedDataFrame, with a slot of lazyIndex, which saves the mapping indexes for each column of DelayedDataFrame. Methods like show, validity check, [/[[ subsetting, rbind/cbind are implemented for DelayedDataFrame to be operated around lazyIndex. The listData slot stays untouched until a realization call e.g., DataFrame constructor OR as.list() is invoked.
Author: Qian Liu [aut, cre], Hervé Pagès [aut], Martin Morgan [aut]
Maintainer: Qian Liu <Qian.Liu at roswellpark.org>
citation("DelayedDataFrame")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DelayedDataFrame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DelayedDataFrame")| DelayedDataFrame | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6), S4Vectors(>= 0.23.19), DelayedArray(>= 0.7.5) |
| Imports | methods, stats, BiocGenerics |
| System Requirements | |
| URL | https://github.com/Bioconductor/DelayedDataFrame |
| Bug Reports | https://github.com/Bioconductor/DelayedDataFrame/issues |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle, SeqArray, GDSArray |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | VariantExperiment |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DelayedDataFrame_1.28.0.tar.gz |
| Windows Binary (x86_64) | DelayedDataFrame_1.28.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | DelayedDataFrame_1.28.0.tgz |
| macOS Binary (sonoma-arm64) | DelayedDataFrame_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DelayedDataFrame |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DelayedDataFrame |
| Bioc Package Browser | https://code.bioconductor.org/browse/DelayedDataFrame/ |
| Package Short Url | https://bioconductor.org/packages/DelayedDataFrame/ |
| Package Downloads Report | Download Stats |