Package: beadarray
Title: Quality assessment and low-level analysis for Illumina BeadArray
        data
Version: 2.61.1
Date: 2024-10-17
Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt
        Ritchie
Maintainer: Mark Dunning <m.j.dunning@sheffield.ac.uk>
Description: The package is able to read bead-level data (raw TIFFs and
        text files) output by BeadScan as well as bead-summary data
        from BeadStudio. Methods for quality assessment and low-level
        analysis are provided.
Depends: R (>= 2.13.0), BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8),
        hexbin
Imports: BeadDataPackR, limma, AnnotationDbi, stats4, reshape2,
        GenomicRanges, IRanges, illuminaio, methods, ggplot2
Suggests: lumi, vsn, affy, hwriter, beadarrayExampleData,
        illuminaHumanv3.db, gridExtra, BiocStyle,
        TxDb.Hsapiens.UCSC.hg19.knownGene, ggbio, Nozzle.R1, knitr
License: MIT + file LICENSE
biocViews: Microarray, OneChannel, QualityControl, Preprocessing
LazyData: yes
VignetteBuilder: knitr
PackageStatus: Deprecated
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-03-13 13:31:09 UTC
RemoteUrl: https://github.com/bioc/beadarray
RemoteRef: HEAD
RemoteSha: 24de7980fd25a2ca76bc34c03b1e8cb81fc7b781
NeedsCompilation: yes
Packaged: 2026-03-14 04:16:46 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2026-03-14 04:20:01 UTC; windows
Archs: x64
