Package: dmGsea
Type: Package
Title: Efficient Gene Set Enrichment Analysis for DNA Methylation Data
Version: 1.1.1
Authors@R: 
    c(person("Zongli","Xu",email="xuz@niehs.nih.gov",role=c("cre","aut"),
        comment=c(ORCID="0000-0002-9034-8902")),
    person("Alison","Motsinger-Reif",email="alison.motsinger-reif@nih.gov"
        ,role="aut"),
    person("Liang", "Niu", role="aut",email="niulg@ucmail.uc.edu")
    )
Description: The R package dmGsea provides efficient gene set enrichment 
    analysis specifically for DNA methylation data. It addresses key biases,
    including probe dependency and varying probe numbers per gene. The package
    supports Illumina 450K, EPIC, and mouse methylation arrays. Users can also
    apply it to other omics data by supplying custom probe-to-gene mapping 
    annotations. dmGsea is flexible, fast, and well-suited for large-scale 
    epigenomic studies.
License: Artistic-2.0
biocViews: GeneSetEnrichment,
        Pathways,DNAMethylation,Proteomics,Sequencing,
        CopyNumberVariation, GeneExpression, GenomicVariation, Coverage
Depends: utils,stats,parallel,Matrix,SummarizedExperiment,methods,R(>=
        3.5.0)
Suggests: msigdbr, org.Hs.eg.db, org.Mm.eg.db, minfi, knitr, rmarkdown,
        GO.db, KEGGREST, testthat,
        IlluminaHumanMethylationEPICanno.ilm10b4.hg19,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, BiocStyle, RUnit
Imports: dqrng,AnnotationDbi,poolr,BiasedUrn,Seqinfo
VignetteBuilder: knitr
Encoding: UTF-8
URL: https://github.com/Bioconductor/dmGsea
BugReports: https://github.com/Bioconductor/dmGsea/issues
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/dmGsea
git_branch: devel
git_last_commit: 248aa7c
git_last_commit_date: 2025-10-31
Repository: Bioconductor 3.23
Date/Publication: 2025-11-13
Packaged: 2025-11-13 21:17:29 UTC; biocbuild
Author: Zongli Xu [cre, aut] (ORCID: <https://orcid.org/0000-0002-9034-8902>),
  Alison Motsinger-Reif [aut],
  Liang Niu [aut]
Maintainer: Zongli Xu <xuz@niehs.nih.gov>
Built: R 4.6.0; ; 2025-11-14 04:35:41 UTC; unix
