# SpaceTrooper performs Quality Control analysis of Image-Based spatial

## Documentation for package ‘SpaceTrooper’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.getActiveGeometryName | .getActiveGeometryName
.renameGeometry | .renameGeometry
.setActiveGeometry | .setActiveGeometry
addPolygonsToSPE | addPolygonsToSPE
checkOutliers | checkOutliers
computeAreaFromPolygons | computeAreaFromPolygons
computeAspectRatioFromPolygons | computeAspectRatioFromPolygons
computeCenterFromPolygons | computeCenterFromPolygons
computeLambda | computeLambda
computeMissingMetricsMerfish | computeMissingMetricsMerfish
computeMissingMetricsXenium | computeMissingMetricsXenium
computeOutliersQCScore | computeOutliersQCScore
computeQCScore | computeQCScore
computeQCScoreFlags | computeQCScoreFlags
computeSpatialOutlier | computeSpatialOutlier
computeThresholdFlags | computeThresholdFlags
computeTrainDF | computeTrainDF
getFencesOutlier | getFencesOutlier
getModelFormula | getModelFormula
plotCellsFovs | plotCellsFovs
plotCentroids | plotCentroids
plotMetricHist | plotMetricHist
plotPolygons | plotPolygons
plotQScoreTerms | plotQScoreTerms
plotZoomFovsMap | plotZoomFovsMap
qcFlagPlots | qcFlagPlots
readAndAddPolygonsToSPE | readAndAddPolygonsToSPE
readCosmxProteinSPE | readCosmxSPE
readCosmxSPE | readCosmxSPE
readMerfishSPE | readMerfishSPE
readPolygons | readPolygons
readPolygonsCosmx | readPolygonsCosmx
readPolygonsMerfish | readPolygonsMerfish
readPolygonsXenium | readPolygonsXenium
readXeniumSPE | Load data from a 10x Genomics Xenium experiment
spatialPerCellQC | spatialPerCellQC
trainModel | trainModel
updateCosmxProteinSPE | updateCosmxProteinSPE
updateCosmxSPE | updateCosmxSPE
updateXeniumSPE | updateXeniumSPE