CytoPipeline-package	CytoPipeline
addProcessingStep	handlingProcessingSteps
aggregateAndSample	aggregateAndSample
appendCellID	appendCellID
applyScaleTransforms	applyScaleTransforms
areFluoCols	areFluoCols
areSignalCols	areSignalCols
as.json.CytoProcessingStep	CytoProcessingStep
as.list.CytoPipeline	CytoPipelineClass
as.list.CytoProcessingStep	CytoProcessingStep
buildCytoPipelineFromCache	interactingWithCytoPipelineCache
characterOrFunction-class	CytoProcessingStep
checkCytoPipelineConsistencyWithCache	interactingWithCytoPipelineCache
cleanProcessingSteps	handlingProcessingSteps
collectNbOfRetainedEvents	inspectCytoPipelineObjects
compensateFromMatrix	compensateFromMatrix
computeScatterChannelsLinearScale	computeScatterChannelsLinearScale
CytoPipeline	CytoPipeline
CytoPipeline,character-method	CytoPipelineClass
CytoPipeline,list-method	CytoPipelineClass
CytoPipeline,missing-method	CytoPipelineClass
CytoPipeline-class	CytoPipelineClass
CytoPipeline-class,	CytoPipelineClass
CytoPipelineClass	CytoPipelineClass
CytoProcessingStep	CytoProcessingStep
CytoProcessingStep-class	CytoProcessingStep
deleteCytoPipelineCache	interactingWithCytoPipelineCache
estimateScaleTransforms	estimateScaleTransforms
execute	execute
executeProcessingStep	CytoProcessingStep
experimentName	CytoPipelineClass
experimentName<-	CytoPipelineClass
export2JSONFile	exportCytoPipeline
exportCytoPipeline	exportCytoPipeline
findTimeChannel	findTimeChannel
from.json.CytoProcessingStep	CytoProcessingStep
getAcquiredCompensationMatrix	getAcquiredCompensationMatrix
getChannelNamesFromMarkers	getChannelNamesFromMarkers
getCPSARGS	CytoProcessingStep
getCPSFUN	CytoProcessingStep
getCPSName	CytoProcessingStep
getCytoPipelineExperimentNames	inspectCytoPipelineObjects
getCytoPipelineFlowFrame	inspectCytoPipelineObjects
getCytoPipelineObjectFromCache	inspectCytoPipelineObjects
getCytoPipelineObjectInfos	inspectCytoPipelineObjects
getCytoPipelineScaleTransform	inspectCytoPipelineObjects
getFCSFileName	getFCSFileName
getNbProcessingSteps	handlingProcessingSteps
getProcessingStep	handlingProcessingSteps
getProcessingStepNames	handlingProcessingSteps
getTransfoParams	getTransfoParams
ggplotEvents	ggplotEvents
ggplotFilterEvents	ggplotFilterEvents
ggplotFlowRate	ggplotFlowRate
handlingProcessingSteps	handlingProcessingSteps
inspectCytoPipelineObjects	inspectCytoPipelineObjects
interactingWithCytoPipelineCache	interactingWithCytoPipelineCache
OMIP021Samples	OMIP021Samples
pData	CytoPipelineClass
pData<-	CytoPipelineClass
plotCytoPipelineProcessingQueue	inspectCytoPipelineObjects
qualityControlFlowAI	qualityControlFlowAI
qualityControlPeacoQC	qualityControlPeacoQC
readRDSObject	readRDSObject
readSampleFiles	readSampleFiles
removeChannels	removeChannels
removeDeadCellsManualGate	removeDeadCellsManualGate
removeDebrisManualGate	removeDebrisManualGate
removeDoubletsCytoPipeline	removeDoubletsCytoPipeline
removeMarginsPeacoQC	removeMarginsPeacoQC
removeProcessingStep	handlingProcessingSteps
resetCellIDs	resetCellIDs
runCompensation	runCompensation
sampleDisplayNames	CytoPipelineClass
sampleFiles	CytoPipelineClass
sampleFiles<-	CytoPipelineClass
sampleNameFromDisplayName	CytoPipelineClass
show,CytoPipeline-method	CytoPipelineClass
show,CytoProcessingStep-method	CytoProcessingStep
showProcessingSteps	handlingProcessingSteps
singletsGate	singletsGate
subsample	subsample
updateMarkerName	updateMarkerName
writeFlowFrame	writeFlowFrame
