Probe level Locally moderated Weighted t-tests.

Documentation for package ‘plw’ version 1.12.0

plw-package	plw
AffySpikeU95Subset	Spike-in data
estimateMVbeta	Zero mean multivariate t-dist. with covariate dependent scale.
estimateSigma	Fit zero mean multivariate t-distribution, known df
estimateSigmaMV	Fit zero mean multivariate t-distribution
estimateSigmaMVbeta	Zero mean multivariate t-dist. with covariate dependent scale.
getKnots	Spline-knots for plw and lmw
HGU95subset1016	Spike-in data
HowToPLW	View HowToPLW
lmw	Locally Moderated Weighted-t.
logitTStat	logit-t and t-test by row
logitTTransform	logit-t and t-test by row
madByIndex	Computes statistics by index or by row
meanByIndex	Computes statistics by index or by row
meanSdByRow	Computes statistics by index or by row
medianByIndex	Computes statistics by index or by row
orderStatByIndex	Computes statistics by index or by row
plotSummaryLog2FC	Return or plots analysis result for top ranking or selected probe sets
plotSummaryT	Return or plots analysis result for top ranking or selected probe sets
plw	Probe level Locally moderated Weighted median-t.
scaleParameterPlot	Scale parameter plotted against mean intensity
sdByIndex	Computes statistics by index or by row
spikedProbesU95	Spike-in data
studenttTTest	logit-t and t-test by row
topRankSummary	Return or plots analysis result for top ranking or selected probe sets
varHistPlot	Variance histogram and density