FABIA: Factor Analysis for Bicluster Acquisition

Documentation for package ‘fabia’ version 1.4.0

DESCRIPTION file.
Overview of user guides and package vignettes; browse directory.
Code demos. Use demo() to run them.

Help Pages

estimateMode	Estimation of the modes of the rows of a matrix
extractBic	Extraction of Biclusters
extractPlot	Plotting of Biclustering Results
fabi	Factor Analysis for Bicluster Acquisition: Laplace Prior (FABI)
fabia	Factor Analysis for Bicluster Acquisition: Laplace Prior (FABIA)
fabiaDemo	Demos for fabia
fabiap	Factor Analysis for Bicluster Acquisition: Post-Projection (FABIAP)
fabias	Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIAS)
fabiasp	Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIASP)
fabiaVersion	Display version info for package and for FABIA
Factorization	The Factorization Class
Factorization-class	The Factorization Class
makeFabiaData	Generation of Bicluster Data
makeFabiaDataBlocks	Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataBlocksPos	Generation of Bicluster Data with Bicluster Blocks
makeFabiaDataPos	Generation of Bicluster Data
matrixImagePlot	Plotting of a Matrix
mfsc	Sparse Matrix Factorization for Bicluster Analysis (MFSC)
nmfdiv	Non-negative Matrix Factorization: Kullback-Leibler Divergence
nmfeu	Non-negative Matrix Factorization: Euclidean Distance
nmfsc	Non-negative Sparse Matrix Factorization
plot	Plot of a Matrix Factorization
plot-method	Plot of a Matrix Factorization
plot-methods	Plot of a Matrix Factorization
plotBicluster	Plotting of a bicluster
projFunc	Projection of a Vector to a Sparse Vector
projFuncPos	Projection of a Vector to a Non-negative Sparse Vector
show	Plot Statistics of a Matrix Factorization
show-method	Plot Statistics of a Matrix Factorization
show-methods	Plot Statistics of a Matrix Factorization
showSelected	Plot Selected Statistics of a Matrix Factorization
showSelected-method	Plot Selected Statistics of a Matrix Factorization
showSelected-methods	Plot Selected Statistics of a Matrix Factorization
summary	Summary of Matrix Factorization
summary-method	Summary of Matrix Factorization
summary-methods	Summary of Matrix Factorization