crlmm-package |
Genotype Calling via CRLMM Algorithm |
CA |
Accessors for allele-specific or total copy number |
CA-method |
crlmm methods for class "CNSet" |
CB |
Accessors for allele-specific or total copy number |
CB-method |
crlmm methods for class "CNSet" |
celDates |
Extract dates from the cel file header |
cnSet |
Object of class 'CNSet' |
constructInf |
Instantiate an object of class CNSet for the Infinium platforms. |
corr |
Accessors for batch-specific summary statistics. |
corr-method |
Methods for class "AssayData" in crlmm |
corr-method |
crlmm methods for class "CNSet" |
crlmm |
Genotype oligonucleotide arrays with CRLMM |
crlmm2 |
Genotype oligonucleotide arrays with CRLMM |
crlmmCopynumber |
Locus- and allele-specific estimation of copy number |
crlmmCopynumber2 |
Locus- and allele-specific estimation of copy number |
crlmmCopynumberLD |
Locus- and allele-specific estimation of copy number |
crlmmIllumina |
Genotype Illumina Infinium II BeadChip data with CRLMM |
crlmmIlluminaV2 |
Read and Genotype Illumina Infinium II BeadChip data with CRLMM |
genotype |
Preprocessing and genotyping of Affymetrix arrays. |
genotype.Illumina |
Preprocessing and genotyping of Illumina Infinium II arrays. |
genotype2 |
Preprocessing and genotyping of Affymetrix arrays. |
genotypeInf |
Genotyping of Illumina Infinium II arrays. |
genotypeLD |
Preprocessing and genotyping of Affymetrix arrays. |
lines-method |
crlmm methods for class "CNSet" |
mads |
Accessors for batch-specific summary statistics. |
mads-method |
Methods for class "AssayData" in crlmm |
mads-method |
crlmm methods for class "CNSet" |
medians |
Accessors for batch-specific summary statistics. |
medians-method |
Methods for class "AssayData" in crlmm |
medians-method |
crlmm methods for class "CNSet" |
Ns |
Accessors for batch-specific summary statistics. |
Ns-method |
Methods for class "AssayData" in crlmm |
Ns-method |
crlmm methods for class "CNSet" |
nuA |
Accessors for allele-specific or total copy number |
nuA-method |
crlmm methods for class "CNSet" |
nuB |
Accessors for allele-specific or total copy number |
nuB-method |
crlmm methods for class "CNSet" |
phiA |
Accessors for allele-specific or total copy number |
phiA-method |
crlmm methods for class "CNSet" |
phiB |
Accessors for allele-specific or total copy number |
phiB-method |
crlmm methods for class "CNSet" |
preprocessInf |
Preprocessing of Illumina Infinium II arrays. |
rawCopynumber |
Accessors for allele-specific or total copy number |
rawCopynumber-method |
crlmm methods for class "CNSet" |
readIdatFiles |
Reads Idat Files from Infinium II Illumina BeadChips |
readIdatFiles2 |
Reads Idat Files from Infinium II Illumina BeadChips |
sample.CNSet |
Object of class 'CNSet' |
snprma |
Preprocessing tool for SNP arrays. |
snprma2 |
Preprocessing tool for SNP arrays. |
tau2 |
Accessors for batch-specific summary statistics. |
tau2-method |
Methods for class "AssayData" in crlmm |
tau2-method |
crlmm methods for class "CNSet" |
totalCopynumber |
Accessors for allele-specific or total copy number |
totalCopynumber-method |
crlmm methods for class "CNSet" |