clusterProfiler-package | statistical analysis and visulization of functional profiles for genes and... |
clusterProfiler | statistical analysis and visulization of functional profiles for genes and... |
compareCluster | Compare gene clusters functional profile... |
compareClusterResult-class | Class "compareClusterResult"... |
enrichGO | GO Enrichment Analysis of a gene set. |
enrichGOResult-class | Class "enrichGOResult"... |
enrichKEGG | KEGG Enrichment Analysis of a gene set. |
enrichKEGGResult-class | Class "enrichKEGGResult"... |
gcSample | Datasets... |
geneID2geneName | convert gene IDs to gene Names |
getGO2ExtID | query genes annotated by given GOIDs |
getGOLevel | get GOIDs at a specific level |
getRatio | getRatio |
GO2Term | Mapping GOIDs to GO Terms |
groupGO | Functional Profile of a gene set at specific GO level. |
groupGOResult-class | Class "groupGOResult"... |
HyperG | hypergeometric test |
path2Name | convert KEGG pathway ID to pathway Name |
plot | plot method |
plot-method | Class "compareClusterResult"... |
plot-method | Class "enrichGOResult"... |
plot-method | Class "enrichKEGGResult"... |
plot-method | Class "groupGOResult"... |
plotting.barplot | internal function of barplot |
plotting.clusterProfile | plotting-clusterProfile |
pModify | changing title and font size |
show | show method |
show-method | Class "compareClusterResult"... |
show-method | Class "enrichGOResult"... |
show-method | Class "enrichKEGGResult"... |
show-method | Class "groupGOResult"... |
summary | summary method |
summary-method | Class "compareClusterResult"... |
summary-method | Class "enrichGOResult"... |
summary-method | Class "enrichKEGGResult"... |
summary-method | Class "groupGOResult"... |