hmm | Application of the Viterbi algorithm to copy number and/or genotype data. |
hmm.setup | Wrapper for computing emission and transition probabilities needed for fitting the hidden Markov model. |
locusLevelData | Basic data elements required for the HMM |
robustSds | Calculate robust estimates of the standard deviation |
viterbi | Application of the Viterbi algorithm to copy number and/or genotype data. |