A Hidden Markov Model for high throughput genotyping arrays

Documentation for package ‘VanillaICE’ version 1.14.0

hmm	Application of the Viterbi algorithm to copy number and/or genotype data.
hmm.setup	Wrapper for computing emission and transition probabilities needed for fitting the hidden Markov model.
locusLevelData	Basic data elements required for the HMM
robustSds	Calculate robust estimates of the standard deviation
viterbi	Application of the Viterbi algorithm to copy number and/or genotype data.